Factsheet for PGSC0003DMT400033858

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041720.1.1	Tomato	nucleus, plastid	94.79	94.79
VIT_11s0016g01220.t01	Wine grape	extracellular	72.99	74.04
PGSC0003DMT400036428	Potato	extracellular	68.25	69.23
KRH02617	Soybean	nucleus	68.25	69.23
PGSC0003DMT400030317	Potato	extracellular	65.88	66.83
KRH12528	Soybean	extracellular	65.88	65.26
TraesCS2B01G090300.1	Wheat	extracellular	60.66	60.38
HORVU7Hr1G036720.1	Barley	extracellular	60.19	59.91
TraesCS7B01G084000.1	Wheat	plastid	60.19	59.91
TraesCS2D01G073700.1	Wheat	extracellular	60.19	59.91
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	59.72	59.43
TraesCS7A01G178300.1	Wheat	extracellular	59.72	59.43
TraesCS2A01G075000.1	Wheat	extracellular	59.72	59.15
TraesCS2D01G073600.1	Wheat	extracellular	58.29	59.13
Zm00001d037513_P001	Maize	plastid	59.24	58.96
Os08t0460000-01	Rice	extracellular	58.29	57.75
KRH19305	Soybean	cytosol, extracellular, plastid	57.35	55.76
EES17780	Sorghum	extracellular, vacuole	57.82	55.2
GSMUA_Achr2P18710_001	Banana	extracellular	62.09	52.4
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	63.03	51.95
PGSC0003DMT400061586	Potato	extracellular	36.02	35.85
PGSC0003DMT400063166	Potato	vacuole	36.02	35.02
PGSC0003DMT400063164	Potato	vacuole	36.49	35.0
PGSC0003DMT400047065	Potato	cytosol, extracellular	33.65	33.81
PGSC0003DMT400047067	Potato	cytosol	33.65	33.65
PGSC0003DMT400058298	Potato	extracellular, vacuole	30.33	30.33

Protein Annotations

EntrezGene:102602789	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:M1AZT7	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400013010	PGSC:PGSC0003DMG400013010
EnsemblPlants:PGSC0003DMT400033858	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF2	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI0002969822	RefSeq:XP_006342367.1
SEG:seg	:	:	:	:	:

Description

24K germin [Source:PGSC_GENE;Acc:PGSC0003DMG400013010]

Coordinates

chr7:+:38547947..38548774

Molecular Weight (calculated)

22057.0 Da

IEP (calculated)

6.238

GRAVY (calculated)

0.557

Length

211 amino acids

Sequence
(BLAST)

001: MYFQGLFIFS LLIISSSEAA VLDFCVGDLS LPDGPGGYAC KKPSKVTSDD FVFSGLAAPV KLIPLIKAAV TPAFAPQFPG LNGLGISMAR LDLAIGGVIP
101: MHTHPGASEV LYVVQGEICA GFISSSDNKV FFKTLKQGDI MVFPQGLLHF QINSGKTSAL AIVSFSSPTP GLQITDFALF ANDLPTELVA ATTFLDAALI
201: KKLKGVLGGT N

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.