CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 20458513
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02617	Soybean	nucleus	79.34	81.25
VIT_11s0016g01220.t01	Wine grape	extracellular	69.01	70.67
KRH06186	Soybean	extracellular, vacuole	67.61	68.9
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	68.08	68.72
CDY51841	Canola	extracellular, plasma membrane, vacuole	68.08	68.72
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	67.61	68.25
KRH47600	Soybean	extracellular	66.67	67.94
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	67.14	67.77
CDX70935	Canola	extracellular, vacuole	67.14	67.77
CDY45080	Canola	extracellular, plasma membrane, vacuole	67.14	67.77
Bra002316.1-P	Field mustard	extracellular	66.67	67.3
CDY22866	Canola	extracellular	66.67	67.3
CDY16549	Canola	extracellular	66.67	67.3
CDX92448	Canola	extracellular	66.67	67.3
CDX85429	Canola	extracellular	66.67	67.3
PGSC0003DMT400033858	Potato	extracellular	65.26	65.88
KRH19305	Soybean	cytosol, extracellular, plastid	66.2	64.98
Solyc07g041720.1.1	Tomato	nucleus, plastid	64.32	64.93
CDY45077	Canola	extracellular	61.03	61.32
Bra020115.1-P	Field mustard	extracellular	61.03	61.32
CDY27880	Canola	extracellular	61.03	61.32
TraesCS7A01G178300.1	Wheat	extracellular	60.09	60.38
TraesCS2D01G073700.1	Wheat	extracellular	60.09	60.38
TraesCS7B01G084000.1	Wheat	plastid	60.09	60.38
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	60.09	60.38
KRH47601	Soybean	endoplasmic reticulum	58.69	60.1
Os08t0460000-01	Rice	extracellular	60.09	60.09
HORVU7Hr1G036720.1	Barley	extracellular	59.62	59.91
TraesCS2B01G090300.1	Wheat	extracellular	59.62	59.91
TraesCS2A01G075000.1	Wheat	extracellular	59.62	59.62
TraesCS2D01G073600.1	Wheat	extracellular	57.28	58.65
KRH47606	Soybean	extracellular, vacuole	56.34	57.69
KRH47602	Soybean	extracellular, vacuole	56.34	57.69
Bra020114.1-P	Field mustard	extracellular, vacuole	58.69	57.08
CDY45079	Canola	extracellular, vacuole	58.69	57.08
Zm00001d037513_P001	Maize	plastid	56.81	57.08
EES17780	Sorghum	extracellular, vacuole	57.75	55.66
KRH06188	Soybean	extracellular	46.01	54.14
KRH47603	Soybean	extracellular, vacuole	55.87	52.89
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	61.97	51.56
GSMUA_Achr2P18710_001	Banana	extracellular	59.15	50.4
KRH47605	Soybean	extracellular	24.88	49.53
KRH06189	Soybean	endoplasmic reticulum, extracellular, vacuole	44.6	46.12
KRH07140	Soybean	extracellular, vacuole	44.13	44.76
KRH07144	Soybean	extracellular, vacuole	44.13	44.13
KRH07141	Soybean	cytosol	38.03	40.1
KRG90715	Soybean	nucleus	36.62	37.32
KRG90420	Soybean	extracellular, nucleus	38.03	36.16
KRH33715	Soybean	nucleus	37.56	35.87
KRH36030	Soybean	extracellular	30.99	35.68
KRH68383	Soybean	nucleus	36.15	35.32
KRH33688	Soybean	extracellular	35.68	34.55
KRG96655	Soybean	extracellular, vacuole	35.21	34.25
KRG96631	Soybean	extracellular, vacuole	29.58	34.24
KRH30838	Soybean	extracellular	36.15	34.07
KRH32736	Soybean	extracellular, vacuole	35.21	33.19
KRH74710	Soybean	extracellular	34.27	33.18
KRH69437	Soybean	extracellular	33.8	32.73
KRH33687	Soybean	extracellular	33.8	32.58
KRH69151	Soybean	cytosol	23.0	32.03

Protein Annotations

EntrezGene:100806553	Gene3D:2.60.120.10	MapMan:35.1	EMBL:ACUP02009333	UniProt:C7S8C4	InterPro:Cupin_1
EMBL:EU916258	EnsemblPlantsGene:GLYMA_15G176900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735	GO:GO:0046872
InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	EnsemblPlants:KRH12528	ProteinID:KRH12528	ProteinID:KRH12528.1
PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI0001B1E5B9	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:16798548..16799783

Molecular Weight (calculated)

22250.0 Da

IEP (calculated)

6.502

GRAVY (calculated)

0.446

Length

213 amino acids

Sequence
(BLAST)

001: MKKMILTLFF NIILSLLSLS HASVVDFCVA DYTGPNGPAG YSCKSPAKVT VDDFVYSGLG TAGNTSNIIK AAVTPAFDAQ FPGVNGLGIS IARLDLAAGG
101: VIPLHTHPGA SELLVVVQGT ICTGFVASDN TVYLKTLKKG DVMVYPQGLL HFQINDGESQ ALAFVSFSSA NPGLQILDFS LFKSDFPTEL ITQTTFIDAA
201: VVKKLKGVLG GSG

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.