Factsheet for VIT_11s0016g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033858	Potato	extracellular	74.04	72.99
Solyc07g041720.1.1	Tomato	nucleus, plastid	72.6	71.56
KRH02617	Soybean	nucleus	71.15	71.15
KRH12528	Soybean	extracellular	70.67	69.01
VIT_09s0002g01320.t01	Wine grape	extracellular	65.87	65.55
TraesCS2B01G090300.1	Wheat	extracellular	65.87	64.62
TraesCS2D01G073700.1	Wheat	extracellular	65.87	64.62
VIT_18s0086g00410.t01	Wine grape	extracellular	64.42	64.11
TraesCS2A01G075000.1	Wheat	extracellular	65.38	63.85
HORVU7Hr1G036720.1	Barley	extracellular	64.9	63.68
TraesCS7A01G178300.1	Wheat	extracellular	64.9	63.68
TraesCS2D01G073600.1	Wheat	extracellular	63.46	63.46
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	64.42	63.21
TraesCS7B01G084000.1	Wheat	plastid	63.46	62.26
VIT_18s0086g00590.t01	Wine grape	cytosol	36.54	61.79
Os08t0460000-01	Rice	extracellular	62.98	61.5
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	28.37	59.6
Zm00001d037513_P001	Maize	plastid	59.62	58.49
VIT_07s0005g05920.t01	Wine grape	extracellular	57.69	57.42
VIT_07s0005g05910.t01	Wine grape	extracellular	56.73	56.46
VIT_07s0005g05930.t01	Wine grape	extracellular	56.73	56.46
EES17780	Sorghum	extracellular, vacuole	59.62	56.11
KRH19305	Soybean	cytosol, extracellular, plastid	58.17	55.76
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	67.31	54.69
GSMUA_Achr2P18710_001	Banana	extracellular	64.42	53.6
VIT_12s0059g00740.t01	Wine grape	cytosol	31.25	52.85
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	57.69	48.39
VIT_14s0060g00120.t01	Wine grape	extracellular	37.98	36.41
VIT_07s0005g02370.t01	Wine grape	extracellular	37.02	35.48
VIT_07s0005g02380.t01	Wine grape	extracellular	36.54	35.02
VIT_08s0007g03430.t01	Wine grape	cytosol	32.69	33.5
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	35.1	32.02
VIT_01s0026g00970.t01	Wine grape	extracellular	33.17	31.22

Protein Annotations

EntrezGene:100233095	wikigene:100233095	Gene3D:2.60.120.10	MapMan:35.1	UniProt:A8QK92	ProteinID:ABL60875
ProteinID:ABL60875.1	EMBL:AM443008	ProteinID:CAN67380	ProteinID:CAN67380.1	ProteinID:CCB51405	ProteinID:CCB51405.1
InterPro:Cupin_1	EMBL:EF064174	EMBL:FN595756	EntrezGene:GER6	wikigene:GER6	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145
GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710
RefSeq:NP_001268059.1	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92
InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	TIGR:TC65421
UniParc:UPI00015C8318	ArrayExpress:VIT_11s0016g01220	EnsemblPlantsGene:VIT_11s0016g01220	EnsemblPlants:VIT_11s0016g01220.t01	unigene:Vvi.7209	:

Description

Germin-like protein 6 [Source:UniProtKB/TrEMBL;Acc:A8QK92]

Coordinates

chr11:-:967279..968160

Molecular Weight (calculated)

21526.4 Da

IEP (calculated)

6.915

GRAVY (calculated)

0.576

Length

208 amino acids

Sequence
(BLAST)

001: MFLPILCIFS LILSSHAAVQ DFCVGDLAAP EGPAGYSCKK PAKVTVDDFV FSGLGMAGNT SNLIKAAVTP AFAPQFPGLN GLGLSIARLD LAVGGVVPMH
101: THPGGSEVLL VTQGAICAGF ISSANTVYFK TLKKGDIMIF PQGLLHFQVN GAGIPSTAFV SFSSPQPGLQ ILDYALFAND LPTELVVQTT FLDAAVVKKL
201: KAVLGGTN

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.