Factsheet for VIT_09s0002g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

cytosol 1
endoplasmic reticulum 3
mitochondrion 1
vacuole 3
extracellular 4
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	33.47	83.84
VIT_18s0086g00590.t01	Wine grape	cytosol	33.47	67.48
VIT_09s0002g01320.t01	Wine grape	extracellular	53.63	63.64
VIT_18s0086g00410.t01	Wine grape	extracellular	52.82	62.68
VIT_11s0016g01220.t01	Wine grape	extracellular	48.39	57.69
VIT_12s0059g00740.t01	Wine grape	cytosol	27.42	55.28
Solyc03g123410.1.1	Tomato	nucleus	45.97	54.81
PGSC0003DMT400036428	Potato	extracellular	45.56	54.33
VIT_07s0005g05930.t01	Wine grape	extracellular	45.56	54.07
VIT_07s0005g05920.t01	Wine grape	extracellular	45.56	54.07
VIT_07s0005g05910.t01	Wine grape	extracellular	45.56	54.07
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.56	53.55
CDY51841	Canola	extracellular, plasma membrane, vacuole	45.56	53.55
PGSC0003DMT400030317	Potato	extracellular	44.35	52.88
Bra002316.1-P	Field mustard	extracellular	44.76	52.61
CDY45080	Canola	extracellular, plasma membrane, vacuole	44.76	52.61
CDY22866	Canola	extracellular	44.76	52.61
CDY16549	Canola	extracellular	44.76	52.61
CDX92448	Canola	extracellular	44.76	52.61
CDX85429	Canola	extracellular	44.76	52.61
CDX70935	Canola	extracellular, vacuole	44.76	52.61
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	44.76	52.61
HORVU7Hr1G036720.1	Barley	extracellular	44.76	52.36
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	44.76	52.36
TraesCS7A01G178300.1	Wheat	extracellular	44.35	51.89
TraesCS7B01G084000.1	Wheat	plastid	44.35	51.89
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	43.95	51.66
TraesCS2D01G073600.1	Wheat	extracellular	43.15	51.44
Os08t0460000-01	Rice	extracellular	43.95	51.17
TraesCS2B01G090300.1	Wheat	extracellular	43.55	50.94
TraesCS2D01G073700.1	Wheat	extracellular	43.55	50.94
TraesCS2A01G075000.1	Wheat	extracellular	43.55	50.7
Zm00001d037513_P001	Maize	plastid	42.74	50.0
EES17780	Sorghum	extracellular, vacuole	43.15	48.42
CDY27880	Canola	extracellular	39.92	46.7
CDY45077	Canola	extracellular	39.92	46.7
Bra020115.1-P	Field mustard	extracellular	39.92	46.7
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	46.37	44.92
Bra020114.1-P	Field mustard	extracellular, vacuole	39.11	44.29
CDY45079	Canola	extracellular, vacuole	39.11	44.29
GSMUA_Achr2P18710_001	Banana	extracellular	43.15	42.8
VIT_14s0060g00120.t01	Wine grape	extracellular	29.84	34.1
VIT_08s0007g03430.t01	Wine grape	cytosol	27.82	33.99
VIT_07s0005g02380.t01	Wine grape	extracellular	29.03	33.18
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	29.84	32.46
VIT_01s0026g00970.t01	Wine grape	extracellular	27.82	31.22
VIT_07s0005g02370.t01	Wine grape	extracellular	27.02	30.88

Protein Annotations

EntrezGene:100254877	wikigene:100254877	Gene3D:2.60.120.10	MapMan:35.1	ProteinID:CCB59296	ProteinID:CCB59296.1
InterPro:Cupin_1	UniProt:F6HXX1	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074	GO:GO:0030145
GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710
EntrezGene:LOC100254877	wikigene:LOC100254877	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	UniParc:UPI000210A75E
ArrayExpress:VIT_09s0002g01340	EnsemblPlantsGene:VIT_09s0002g01340	EnsemblPlants:VIT_09s0002g01340.t01	RefSeq:XP_002274739	RefSeq:XP_002274739.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:1126148..1127616

Molecular Weight (calculated)

26532.0 Da

IEP (calculated)

4.840

GRAVY (calculated)

0.244

Length

248 amino acids

Sequence
(BLAST)

001: MAQSTTKAEY IAAVVVVNQT LWLRKLLTDL DIKQEVSTQV FEDNQATISI ANDPVFHAAK DFCVADFKAT QGLAGYQCKV PEEVVVDDLV YSGLNVAGNF
101: SDIPKSAINA VFVDQLPGLN GLGLSMARLD LSLGGVIPMH SHPGGSEVLL VTQGSIIAGF ISSNNIAYMK TLKKGDIMVF PKGLLHFQVK SGPVPALLWS
201: SFSSSNPGQQ VLSNALFSNN LASELIEKVT FLDELEVEKL KVLFGGSG

Best Arabidopsis Sequence Match ( AT1G72610.1 )
(BLAST)

001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG

Arabidopsis Description

GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.