Factsheet for VIT_09s0002g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 1
extracellular 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0086g00590.t01	Wine grape	cytosol	68.69	55.28
VIT_12s0059g00740.t01	Wine grape	cytosol	52.53	42.28
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	83.84	33.47
VIT_18s0086g00410.t01	Wine grape	extracellular	68.69	32.54
VIT_09s0002g01320.t01	Wine grape	extracellular	68.69	32.54
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	62.63	29.38
CDY51841	Canola	extracellular, plasma membrane, vacuole	62.63	29.38
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	61.62	28.91
CDX70935	Canola	extracellular, vacuole	61.62	28.91
CDY45080	Canola	extracellular, plasma membrane, vacuole	61.62	28.91
Bra002316.1-P	Field mustard	extracellular	60.61	28.44
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	60.61	28.44
CDY22866	Canola	extracellular	60.61	28.44
CDY16549	Canola	extracellular	60.61	28.44
CDX92448	Canola	extracellular	60.61	28.44
CDX85429	Canola	extracellular	60.61	28.44
VIT_11s0016g01220.t01	Wine grape	extracellular	59.6	28.37
PGSC0003DMT400036428	Potato	extracellular	59.6	28.37
TraesCS2D01G073600.1	Wheat	extracellular	58.59	27.88
Solyc03g123410.1.1	Tomato	nucleus	58.59	27.88
HORVU7Hr1G036720.1	Barley	extracellular	59.6	27.83
TraesCS2B01G090300.1	Wheat	extracellular	59.6	27.83
TraesCS2D01G073700.1	Wheat	extracellular	59.6	27.83
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	59.6	27.83
TraesCS2A01G075000.1	Wheat	extracellular	59.6	27.7
TraesCS7A01G178300.1	Wheat	extracellular	58.59	27.36
TraesCS7B01G084000.1	Wheat	plastid	58.59	27.36
VIT_07s0005g05930.t01	Wine grape	extracellular	56.57	26.79
VIT_07s0005g05920.t01	Wine grape	extracellular	56.57	26.79
VIT_07s0005g05910.t01	Wine grape	extracellular	56.57	26.79
PGSC0003DMT400030317	Potato	extracellular	54.55	25.96
Zm00001d037513_P001	Maize	plastid	54.55	25.47
Os08t0460000-01	Rice	extracellular	54.55	25.35
EES17780	Sorghum	extracellular, vacuole	55.56	24.89
CDY45079	Canola	extracellular, vacuole	54.55	24.66
Bra020114.1-P	Field mustard	extracellular, vacuole	54.55	24.66
CDY45077	Canola	extracellular	52.53	24.53
CDY27880	Canola	extracellular	52.53	24.53
Bra020115.1-P	Field mustard	extracellular	52.53	24.53
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	57.58	22.27
GSMUA_Achr2P18710_001	Banana	extracellular	55.56	22.0
VIT_14s0060g00120.t01	Wine grape	extracellular	40.4	18.43
VIT_01s0026g00970.t01	Wine grape	extracellular	40.4	18.1
VIT_07s0005g02380.t01	Wine grape	extracellular	38.38	17.51
VIT_08s0007g03430.t01	Wine grape	cytosol	35.35	17.24
VIT_07s0005g02370.t01	Wine grape	extracellular	36.36	16.59
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	37.37	16.23

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	ProteinID:CCB59295	ProteinID:CCB59295.1	InterPro:Cupin_1	UniProt:F6HXX0
EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	UniParc:UPI000210A75D	ArrayExpress:VIT_09s0002g01330	EnsemblPlantsGene:VIT_09s0002g01330
EnsemblPlants:VIT_09s0002g01330.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:1121275..1121699

Molecular Weight (calculated)

10399.6 Da

IEP (calculated)

8.532

GRAVY (calculated)

0.304

Length

99 amino acids

Sequence
(BLAST)

1: MARLDLSCGG VIPMHSHSGA SEILLIPEGS INAGFISLNN IAYTKTLKKG DIMVFSKGLL HFQVNSGPVP ALLWSSFSTS NPGLQVLSNA LFSNNLPSG

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.