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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d037513_P001 Maize plastid 90.5 94.34
Os08t0460000-01 Rice extracellular 81.0 84.04
TraesCS2B01G090300.1 Wheat extracellular 78.73 82.08
TraesCS7A01G178300.1 Wheat extracellular 78.73 82.08
TraesCS7D01G180200.1 Wheat extracellular, vacuole 78.73 82.08
HORVU7Hr1G036720.1 Barley extracellular 77.83 81.13
TraesCS2D01G073700.1 Wheat extracellular 77.38 80.66
TraesCS7B01G084000.1 Wheat plastid 77.38 80.66
TraesCS2A01G075000.1 Wheat extracellular 76.92 79.81
TraesCS2D01G073600.1 Wheat extracellular 74.66 79.33
PGSC0003DMT400036428 Potato extracellular 56.11 59.62
VIT_11s0016g01220.t01 Wine grape extracellular 56.11 59.62
Solyc07g041720.1.1 Tomato nucleus, plastid 56.56 59.24
EES15104 Sorghum endoplasmic reticulum, extracellular, vacuole 58.37 59.17
KRH02617 Soybean nucleus 55.66 59.13
Solyc03g123410.1.1 Tomato nucleus 55.2 58.65
PGSC0003DMT400030317 Potato extracellular 55.2 58.65
KRH06186 Soybean extracellular, vacuole 55.2 58.37
Bra020113.1-P Field mustard extracellular, plasma membrane, vacuole 55.66 58.29
CDY45080 Canola extracellular, plasma membrane, vacuole 55.66 58.29
CDY51841 Canola extracellular, plasma membrane, vacuole 55.66 58.29
Bra006567.1-P Field mustard extracellular, plasma membrane, vacuole 55.66 58.29
GSMUA_Achr9P16110_001 Banana plasma membrane, plastid, vacuole 67.42 58.2
CDX68260 Canola extracellular, vacuole 54.3 57.97
PGSC0003DMT400033858 Potato extracellular 55.2 57.82
KRH12528 Soybean extracellular 55.66 57.75
VIT_18s0086g00590.t01 Wine grape cytosol 32.13 57.72
AT1G72610.1 Thale cress extracellular, vacuole 54.3 57.69
GSMUA_Achr2P18710_001 Banana extracellular 65.16 57.6
KRH47600 Soybean extracellular 54.3 57.42
VIT_18s0086g00410.t01 Wine grape extracellular 54.3 57.42
VIT_09s0002g01320.t01 Wine grape extracellular 54.3 57.42
CDX70935 Canola extracellular, vacuole 54.75 57.35
Bra003874.1-P Field mustard extracellular 53.39 57.0
CDY11164 Canola extracellular, vacuole 53.39 57.0
AT5G20630.1 Thale cress extracellular, plasma membrane, vacuole 54.3 56.87
CDY22866 Canola extracellular 54.3 56.87
Bra002316.1-P Field mustard extracellular 54.3 56.87
CDX85429 Canola extracellular 54.3 56.87
CDX92448 Canola extracellular 54.3 56.87
CDY16549 Canola extracellular 54.3 56.87
VIT_09s0002g01330.t01 Wine grape cytosol, extracellular, nucleus 24.89 55.56
Bra016047.1-P Field mustard vacuole 52.04 53.0
CDX96421 Canola vacuole 52.04 53.0
CDX72929 Canola vacuole 51.58 52.53
Bra020115.1-P Field mustard extracellular 49.32 51.42
CDY45077 Canola extracellular 49.32 51.42
CDY27880 Canola extracellular 49.32 51.42
VIT_12s0059g00740.t01 Wine grape cytosol 28.51 51.22
VIT_07s0005g05920.t01 Wine grape extracellular 48.42 51.2
KRH19305 Soybean cytosol, extracellular, plastid 49.77 50.69
VIT_07s0005g05910.t01 Wine grape extracellular 47.51 50.24
VIT_07s0005g05930.t01 Wine grape extracellular 47.51 50.24
EES15103 Sorghum extracellular 49.32 49.55
CDY45079 Canola extracellular, vacuole 47.96 48.4
Bra020114.1-P Field mustard extracellular, vacuole 47.96 48.4
VIT_09s0002g01340.t01 Wine grape extracellular, vacuole 48.42 43.15
EER95948 Sorghum extracellular 42.99 41.13
EES02060 Sorghum extracellular 39.37 38.84
EES02802 Sorghum extracellular 37.1 37.44
EES04228 Sorghum extracellular 38.01 37.33
EES02420 Sorghum extracellular 38.01 37.17
EER93258 Sorghum endoplasmic reticulum, extracellular 38.01 36.05
EES02061 Sorghum extracellular 38.01 35.29
EER91050 Sorghum extracellular 33.48 32.89
CDX82141 Canola vacuole 32.58 32.58
EES01342 Sorghum extracellular, vacuole 31.22 31.22
EES06908 Sorghum extracellular, vacuole 31.67 29.66
EER95401 Sorghum vacuole 32.13 29.46
KXG32174 Sorghum plastid 38.01 26.58
Protein Annotations
Gene3D:2.60.120.10MapMan:35.1EntrezGene:8071226UniProt:C5Z116InterPro:Cupin_1EnsemblPlants:EES17780
ProteinID:EES17780ProteinID:EES17780.1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005623GO:GO:0030145GO:GO:0030312GO:GO:0031012GO:GO:0045735
GO:GO:0046872InterPro:GerminInterPro:Germin_Mn-BSInterPro:IPR014710PFAM:PF00190PRINTS:PR00325
ScanProsite:PS00725PANTHER:PTHR31238PANTHER:PTHR31238:SF2InterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfSMART:SM00835
EnsemblPlantsGene:SORBI_3009G059100SUPFAM:SSF51182unigene:Sbi.5340SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0001A88858
RefSeq:XP_002439350.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr9:+:6198295..6199362
Molecular Weight (calculated)
22750.6 Da
IEP (calculated)
6.498
GRAVY (calculated)
0.542
Length
221 amino acids
Sequence
(BLAST)
001: MGVAMAIRTV VLLPAVLTLL SFLLLPLASL ALTQDFCVAD LTCSDTPAGY PCKSSVTAND FYYHGLAGQG KINPLIKAAV TPAFVGQFPG VNGLGISAAR
101: LDIEVGGVVP LHTHPAGSEL LFVTQGTVAA GFISSGSNTV YTKTLYAGDV MVFPQGLLHY QYNAGTGPAV GLVAFSSSNP GLQITDFALF ANNLPSAVVE
201: KVTFLDDAQV KKLKSVLGGS G
Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)
001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N
Arabidopsis Description
GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.