Factsheet for Solyc07g041720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033858	Potato	extracellular	94.79	94.79
VIT_11s0016g01220.t01	Wine grape	extracellular	71.56	72.6
Solyc03g123410.1.1	Tomato	nucleus	67.77	68.75
KRH02617	Soybean	nucleus	66.82	67.79
KRH12528	Soybean	extracellular	64.93	64.32
TraesCS2B01G090300.1	Wheat	extracellular	61.14	60.85
HORVU7Hr1G036720.1	Barley	extracellular	60.66	60.38
TraesCS7B01G084000.1	Wheat	plastid	60.66	60.38
Zm00001d037513_P001	Maize	plastid	60.19	59.91
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	60.19	59.91
TraesCS7A01G178300.1	Wheat	extracellular	60.19	59.91
TraesCS2D01G073700.1	Wheat	extracellular	60.19	59.91
TraesCS2D01G073600.1	Wheat	extracellular	58.77	59.62
TraesCS2A01G075000.1	Wheat	extracellular	59.72	59.15
Os08t0460000-01	Rice	extracellular	58.77	58.22
EES17780	Sorghum	extracellular, vacuole	59.24	56.56
KRH19305	Soybean	cytosol, extracellular, plastid	55.92	54.38
GSMUA_Achr2P18710_001	Banana	extracellular	61.61	52.0
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	63.03	51.95
Solyc03g113580.1.1	Tomato	vacuole	35.55	34.56
Solyc11g006980.1.1	Tomato	extracellular	34.6	34.43
Solyc03g113570.1.1	Tomato	vacuole	35.55	34.09
Solyc01g102400.2.1	Tomato	extracellular	34.12	32.73
Solyc01g102390.2.1	Tomato	extracellular	34.12	32.73
Solyc05g006500.2.1	Tomato	extracellular	32.7	31.36
Solyc01g102380.2.1	Tomato	extracellular	33.18	31.25

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:K4CE39	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF2	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc07g041720.1	EnsemblPlants:Solyc07g041720.1.1	UniParc:UPI000276BBF3
SEG:seg	:	:	:	:	:

Description

Germin-like protein subfamily 3 member 3 [Source:Projected from Arabidopsis thaliana (AT5G20630) UniProtKB/Swiss-Prot;Acc:P94072]

Coordinates

chr7:+:54043796..54044431

Molecular Weight (calculated)

22032.0 Da

IEP (calculated)

6.769

GRAVY (calculated)

0.566

Length

211 amino acids

Sequence
(BLAST)

001: MYFQALFLFS LVIISSSQAA VLDFCVGDLS LPDGPGGYAC KKPSKVTADD FVFSGLAATG KIIPLIKAAV TPAFAPQFPG VNGLGISMAR LDLAISGVIP
101: MHTHPGASEV LYVVQGEICA GFISSSDNKV FFKTLKQGDI MVFPQGLLHF QINSGKTSAL AIISFSSPTP GLQITDFALF ANDLPTELVA ATTFLDAALI
201: KKLKGVLGGT N

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.