Factsheet for Solyc01g102380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102400.2.1	Tomato	extracellular	71.88	73.18
Solyc01g102390.2.1	Tomato	extracellular	70.98	72.27
GSMUA_Achr1P25160_001	Banana	extracellular	64.29	65.75
VIT_14s0060g00120.t01	Wine grape	extracellular	63.39	65.44
KRG96655	Soybean	extracellular, vacuole	63.84	65.3
KRH68383	Soybean	nucleus	63.39	65.14
TraesCS3B01G200200.1	Wheat	extracellular	63.39	64.55
TraesCS3D01G176100.1	Wheat	extracellular	63.39	64.55
TraesCS3A01G165500.1	Wheat	extracellular	62.5	63.64
KRH33715	Soybean	nucleus	62.5	62.78
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	60.27	62.5
KRG90420	Soybean	extracellular, nucleus	62.5	62.5
GSMUA_AchrUn_...	Banana	extracellular	60.71	62.39
CDY31080	Canola	extracellular	60.71	62.1
CDY20692	Canola	extracellular	60.71	61.82
Bra030785.1-P	Field mustard	extracellular	60.71	61.82
AT1G09560.1	Thale cress	extracellular	59.38	60.73
GSMUA_Achr5P18440_001	Banana	extracellular	59.38	60.73
CDY22633	Canola	extracellular	58.48	60.65
Os05t0277500-01	Rice	extracellular	59.82	60.63
VIT_07s0005g02380.t01	Wine grape	extracellular	58.48	60.37
TraesCS1D01G081700.1	Wheat	extracellular	60.27	60.27
CDY06361	Canola	extracellular	58.04	60.19
Bra031671.1-P	Field mustard	extracellular	58.04	60.19
CDY50897	Canola	extracellular	59.38	60.18
Os01t0249200-01	Rice	extracellular	60.71	59.91
Bra020014.1-P	Field mustard	extracellular	59.38	59.64
CDX93502	Canola	extracellular	59.38	59.64
TraesCS1A01G080000.1	Wheat	extracellular	59.38	59.38
TraesCS1B01G098000.1	Wheat	extracellular	59.38	58.85
KRH33687	Soybean	extracellular	58.04	58.82
KRH33688	Soybean	extracellular	57.59	58.64
VIT_07s0005g02370.t01	Wine grape	extracellular	55.8	57.6
EES02420	Sorghum	extracellular	58.04	57.52
KRG96631	Soybean	extracellular, vacuole	46.43	56.52
KRH69151	Soybean	cytosol	38.39	56.21
GSMUA_Achr8P29820_001	Banana	extracellular	57.59	56.09
EER95948	Sorghum	extracellular	57.14	55.41
Zm00001d018954_P002	Maize	extracellular	56.7	54.98
HORVU3Hr1G034100.2	Barley	cytosol, plastid	57.14	48.48
Solyc03g113580.1.1	Tomato	vacuole	45.98	47.47
Solyc03g113570.1.1	Tomato	vacuole	44.64	45.45
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	61.61	41.19
KXG32174	Sorghum	plastid	58.04	41.14
Solyc11g006980.1.1	Tomato	extracellular	33.04	34.91
Solyc05g006500.2.1	Tomato	extracellular	33.93	34.55
Solyc07g041720.1.1	Tomato	nucleus, plastid	31.25	33.18
Solyc03g123410.1.1	Tomato	nucleus	29.91	32.21

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EMBL:AB012138	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0010497	GO:GO:0030145	GO:GO:0030312
GO:GO:0045735	GO:GO:0046872	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710
UniProt:O64439	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF18
InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g102380.2
EnsemblPlants:Solyc01g102380.2.1	UniParc:UPI00000A222F	:	:	:	:

Description

Germin-like protein [Source:UniProtKB/TrEMBL;Acc:O64439]

Coordinates

chr1:+:91213103..91214088

Molecular Weight (calculated)

23798.3 Da

IEP (calculated)

8.505

GRAVY (calculated)

0.354

Length

224 amino acids

Sequence
(BLAST)

001: MAVFRKMFPL IMVIMTLLAI NSDKACAGDP DMLQDVCVAD LTSTLKLNGF TCKNMFSAAD FSSMVISKPG ATNNMFGSLV TGANVMAIPG LNTLGVSMAR
101: IDYAPGGINP PHLHPRATEM IYVLQGELDV GFITTANVLV SKHIVQGEVF VFPRGLVHFQ KNNGHMPAAV IAGFNSQLAG TQSIATTLFA ATPAPGVPND
201: ILAQAFQIGT MQVQQIKAKF APRN

Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)

001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK

Arabidopsis Description

GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.