Factsheet for Solyc11g006980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061586	Potato	extracellular	98.11	98.11
KRG90715	Soybean	nucleus	68.87	69.86
KRH36030	Soybean	extracellular	58.49	67.03
EES06908	Sorghum	extracellular, vacuole	52.36	47.03
Os02t0532500-01	Rice	extracellular	50.47	46.72
Zm00001d016697_P001	Maize	extracellular	51.42	46.58
HORVU6Hr1G005420.1	Barley	extracellular	48.58	45.18
TraesCS6D01G033100.1	Wheat	golgi	48.58	45.18
TraesCS6A01G028700.1	Wheat	extracellular, unclear	48.58	45.18
TraesCS6B01G041100.1	Wheat	extracellular	48.11	44.74
Solyc03g113580.1.1	Tomato	vacuole	40.09	39.17
Solyc03g113570.1.1	Tomato	vacuole	39.15	37.73
Solyc01g102390.2.1	Tomato	extracellular	37.26	35.91
Solyc01g102400.2.1	Tomato	extracellular	36.32	35.0
Solyc03g123410.1.1	Tomato	nucleus	33.96	34.62
Solyc07g041720.1.1	Tomato	nucleus, plastid	34.43	34.6
Solyc01g102380.2.1	Tomato	extracellular	34.91	33.04
Solyc05g006500.2.1	Tomato	extracellular	30.66	29.55

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:IPR014710	UniProt:K4D4V9	PFAM:PF00190	PRINTS:PR00325
PANTHER:PTHR31238	PANTHER:PTHR31238:SF8	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g006980.1	EnsemblPlants:Solyc11g006980.1.1	UniParc:UPI000276A0E2	:	:

Description

No Description!

Coordinates

chr11:+:1485191..1485829

Molecular Weight (calculated)

23301.3 Da

IEP (calculated)

7.568

GRAVY (calculated)

0.157

Length

212 amino acids

Sequence
(BLAST)

001: MIPSQMIVFL VIFLQSYISL AYDPNPVNDY CIPRTEFSSI FLSCKNTSLV TVDDFIYSGI KDPGNYKHTG FSSIPVSSTV FPGLNTLGMS FVRADFDIDG
101: VNVPHFHPRA TETAFVLEGK IYSGFVDSGN RVFAKVLEKG EVMVFPKGLV HFQMNVGDSP ATILGSFNSQ NPGLVKIPSA VFGAGIKEEL LMKAFGLNDK
201: EIAKLRKKFV PQ

Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)

001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.