Factsheet for Solyc01g102390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 28847647

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047067	Potato	cytosol	94.55	98.58
Solyc01g102400.2.1	Tomato	extracellular	98.18	98.18
Solyc01g102380.2.1	Tomato	extracellular	72.27	70.98
VIT_14s0060g00120.t01	Wine grape	extracellular	68.64	69.59
KRH68383	Soybean	nucleus	67.73	68.35
KRG96655	Soybean	extracellular, vacuole	67.73	68.04
KRH33715	Soybean	nucleus	68.18	67.26
GSMUA_Achr1P25160_001	Banana	extracellular	66.82	67.12
KRG90420	Soybean	extracellular, nucleus	68.18	66.96
Os05t0277500-01	Rice	extracellular	66.82	66.52
GSMUA_Achr5P18440_001	Banana	extracellular	65.91	66.21
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	64.09	65.28
TraesCS1D01G081700.1	Wheat	extracellular	65.45	64.29
TraesCS3D01G176100.1	Wheat	extracellular	64.09	64.09
TraesCS3B01G200200.1	Wheat	extracellular	64.09	64.09
TraesCS1B01G098000.1	Wheat	extracellular	65.0	63.27
TraesCS3A01G165500.1	Wheat	extracellular	63.18	63.18
GSMUA_AchrUn_...	Banana	extracellular	62.27	62.84
VIT_07s0005g02380.t01	Wine grape	extracellular	61.82	62.67
TraesCS1A01G080000.1	Wheat	extracellular	63.18	62.05
CDY31080	Canola	extracellular	61.36	61.64
CDY20692	Canola	extracellular	61.36	61.36
Bra030785.1-P	Field mustard	extracellular	61.36	61.36
KRH33688	Soybean	extracellular	60.45	60.45
CDY06361	Canola	extracellular	59.09	60.19
Bra031671.1-P	Field mustard	extracellular	59.09	60.19
KRH33687	Soybean	extracellular	60.45	60.18
CDY50897	Canola	extracellular	60.0	59.73
CDY22633	Canola	extracellular	58.64	59.72
CDX93502	Canola	extracellular	60.45	59.64
Os01t0249200-01	Rice	extracellular	61.36	59.47
AT1G09560.1	Thale cress	extracellular	59.09	59.36
Bra020014.1-P	Field mustard	extracellular	60.0	59.19
VIT_07s0005g02370.t01	Wine grape	extracellular	58.18	58.99
Zm00001d018954_P002	Maize	extracellular	61.82	58.87
EER95948	Sorghum	extracellular	60.91	58.01
GSMUA_Achr8P29820_001	Banana	extracellular	60.45	57.83
EES02420	Sorghum	extracellular	59.09	57.52
KRG96631	Soybean	extracellular, vacuole	47.73	57.07
KRH69151	Soybean	cytosol	39.55	56.86
HORVU3Hr1G034100.2	Barley	cytosol, plastid	58.18	48.48
Solyc03g113580.1.1	Tomato	vacuole	45.91	46.54
Solyc03g113570.1.1	Tomato	vacuole	44.55	44.55
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	65.91	43.28
KXG32174	Sorghum	plastid	59.09	41.14
Solyc05g006500.2.1	Tomato	extracellular	38.64	38.64
Solyc11g006980.1.1	Tomato	extracellular	35.91	37.26
Solyc03g123410.1.1	Tomato	nucleus	32.73	34.62
Solyc07g041720.1.1	Tomato	nucleus, plastid	32.73	34.12

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150
GO:GO:0009506	GO:GO:0009987	GO:GO:0010497	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:K4B1G7
PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g102390.2	EnsemblPlants:Solyc01g102390.2.1
UniParc:UPI0002767C56	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:91216892..91218972

Molecular Weight (calculated)

23233.3 Da

IEP (calculated)

8.725

GRAVY (calculated)

0.234

Length

220 amino acids

Sequence
(BLAST)

001: MSAFGKFVVV MAVVMLAISL DKASAGDPDM LQDVCVADLT NSLTVNGYLC KKNFSEIDFS SMAIAKAGAT NNTFGSLVTG ANVMKVPGLN TLGVSMARID
101: YAPGGINPPH THPRATEMIF VLEGELDVGF ITTSNVLITK HIVKGEVFAF PRGLVHFQQN NGDVPAAVVA GFNSQLPGTQ SIATTLFASS PTVPDSVLTK
201: TFQVGTKEIQ KIKSRLAPKK

Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)

001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK

Arabidopsis Description

GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.