Factsheet for PGSC0003DMT400047065

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 4
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	vacuole
Plant-mPloc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047067	Potato	cytosol	97.62	97.16
Solyc01g102400.2.1	Tomato	extracellular	98.1	93.64
VIT_14s0060g00120.t01	Wine grape	extracellular	70.95	68.66
KRG96655	Soybean	extracellular, vacuole	70.0	67.12
KRH68383	Soybean	nucleus	69.52	66.97
KRH33715	Soybean	nucleus	70.95	66.82
KRG90420	Soybean	extracellular, nucleus	70.95	66.52
GSMUA_Achr1P25160_001	Banana	extracellular	68.57	65.75
Os05t0277500-01	Rice	extracellular	69.05	65.61
GSMUA_Achr5P18440_001	Banana	extracellular	68.1	65.3
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	66.67	64.81
TraesCS3D01G176100.1	Wheat	extracellular	66.67	63.64
TraesCS3B01G200200.1	Wheat	extracellular	66.67	63.64
TraesCS1D01G081700.1	Wheat	extracellular	67.62	63.39
TraesCS3A01G165500.1	Wheat	extracellular	65.71	62.73
TraesCS1B01G098000.1	Wheat	extracellular	67.14	62.39
GSMUA_AchrUn_...	Banana	extracellular	64.29	61.93
VIT_07s0005g02380.t01	Wine grape	extracellular	63.81	61.75
CDY31080	Canola	extracellular	63.81	61.19
TraesCS1A01G080000.1	Wheat	extracellular	65.24	61.16
CDY20692	Canola	extracellular	63.81	60.91
Bra030785.1-P	Field mustard	extracellular	63.81	60.91
CDY50897	Canola	extracellular	62.38	59.28
CDY06361	Canola	extracellular	60.95	59.26
Bra031671.1-P	Field mustard	extracellular	60.95	59.26
CDX93502	Canola	extracellular	62.86	59.19
KRH33688	Soybean	extracellular	61.9	59.09
Os01t0249200-01	Rice	extracellular	63.81	59.03
KRH33687	Soybean	extracellular	61.9	58.82
CDY22633	Canola	extracellular	60.48	58.8
Bra020014.1-P	Field mustard	extracellular	62.38	58.74
AT1G09560.1	Thale cress	extracellular	60.95	58.45
VIT_07s0005g02370.t01	Wine grape	extracellular	60.0	58.06
KRG96631	Soybean	extracellular, vacuole	50.48	57.61
Zm00001d018954_P002	Maize	extracellular	63.33	57.58
EES02420	Sorghum	extracellular	61.43	57.08
GSMUA_Achr8P29820_001	Banana	extracellular	62.38	56.96
EER95948	Sorghum	extracellular	62.38	56.71
KRH69151	Soybean	cytosol	40.48	55.56
HORVU3Hr1G034100.2	Barley	cytosol, plastid	60.95	48.48
PGSC0003DMT400063166	Potato	vacuole	48.1	46.54
PGSC0003DMT400063164	Potato	vacuole	46.67	44.55
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	68.1	42.69
KXG32174	Sorghum	plastid	61.43	40.82
PGSC0003DMT400058298	Potato	extracellular, vacuole	38.1	37.91
PGSC0003DMT400061586	Potato	extracellular	37.14	36.79
PGSC0003DMT400030317	Potato	extracellular	35.24	35.58
PGSC0003DMT400036428	Potato	extracellular	33.81	34.13
PGSC0003DMT400033858	Potato	extracellular	33.81	33.65

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	ProteinID:AAC78470	ProteinID:AAC78470.1	EMBL:AF067731	InterPro:Cupin_1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:M1BK33	PFAM:PF00190
EnsemblPlantsGene:PGSC0003DMG400018275	PGSC:PGSC0003DMG400018275	EnsemblPlants:PGSC0003DMT400047065	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
UniParc:UPI00029548C3	:	:	:	:	:

Description

Germin [Source:PGSC_GENE;Acc:PGSC0003DMG400018275]

Coordinates

chr1:+:79150104..79152051

Molecular Weight (calculated)

22230.0 Da

IEP (calculated)

8.494

GRAVY (calculated)

0.187

Length

210 amino acids

Sequence
(BLAST)

001: MAVVMLAISL DKACAGDPDM LQDVCVADLT NSLTVNGYFC KKNFSEIDFS SMVIAKAGAT NNTFGSLVTG ANVMKVPGLN TLGVSMARID YAPGGINPPH
101: THPRATEMIF VLEGELDVGF ITTSNVLITK HIVKGEVFAF PRGLVHFQQN NGDVPAAVVA GFNSQLPGTQ SIATTLFASS PSVPDSVLTK TFQVGTKQIQ
201: KIKSRLAPKK

Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)

001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK

Arabidopsis Description

GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.