Factsheet for PGSC0003DMT400063164

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113570.1.1	Tomato	vacuole	92.73	92.73
PGSC0003DMT400063166	Potato	vacuole	85.0	86.18
Bra031058.1-P	Field mustard	extracellular	60.45	62.15
CDX81907	Canola	extracellular	60.0	61.68
CDY19265	Canola	extracellular	60.0	61.68
CDY21688	Canola	extracellular	60.0	61.68
CDY26706	Canola	extracellular	60.0	61.68
Bra025704.1-P	Field mustard	extracellular	59.09	60.75
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	62.73	60.53
AT1G18980.1	Thale cress	extracellular	59.55	59.55
AT1G18970.1	Thale cress	extracellular, vacuole	58.18	58.18
TraesCS5B01G462200.1	Wheat	extracellular, vacuole	53.64	51.3
TraesCS5A01G453200.1	Wheat	extracellular	53.18	50.87
Zm00001d034514_P001	Maize	extracellular	52.27	50.44
TraesCS5D01G464000.1	Wheat	extracellular	52.73	50.43
Os03t0804700-00	Rice	plastid	50.45	49.33
EER93258	Sorghum	endoplasmic reticulum, extracellular	51.36	48.5
Os03t0804500-01	Rice	extracellular	50.91	48.07
CDX68163	Canola	extracellular	47.73	47.95
Bra003784.1-P	Field mustard	extracellular	47.27	47.49
AT1G74820.1	Thale cress	extracellular	48.64	47.14
PGSC0003DMT400047065	Potato	cytosol, extracellular	44.55	46.67
PGSC0003DMT400047067	Potato	cytosol	44.55	46.45
CDX85858	Canola	extracellular	48.18	46.29
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	52.73	39.86
PGSC0003DMT400061586	Potato	extracellular	38.18	39.62
PGSC0003DMT400033858	Potato	extracellular	35.0	36.49
PGSC0003DMT400058298	Potato	extracellular, vacuole	34.55	36.02
PGSC0003DMT400036428	Potato	extracellular	32.73	34.62
PGSC0003DMT400030317	Potato	extracellular	31.82	33.65

Protein Annotations

EntrezGene:102579614	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:IPR014710	UniProt:M1CA63	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400024568	PGSC:PGSC0003DMG400024568	EnsemblPlants:PGSC0003DMT400063164
PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF46	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI000294E48F	RefSeq:XP_006345178.1	:	:

Description

Rhicadhesin receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400024568]

Coordinates

chr3:-:53465261..53465923

Molecular Weight (calculated)

23471.6 Da

IEP (calculated)

7.056

GRAVY (calculated)

0.289

Length

220 amino acids

Sequence
(BLAST)

001: MAIRVMFLLG ILIVLPFPSH SADPDPLQDF CVGILNDTST SLNGFPCKPA SQVTSDDFFF DGLTIEGNTE NAFGFSATVG NVLAFPGLNT LGLSMNRVDF
101: APGGLNPPHS HPRATESGVV IKGKLYVGFL TTKNVLYSKV LTAGEMFVIP RGLVHFQMNV GKEKAMTITA FNSHLPGAVV LPTTLFTSKP PIPDEVLTKA
201: FKIDASVIDG IKAKLGAINY

Best Arabidopsis Sequence Match ( AT1G18980.1 )
(BLAST)

001: MTTLQISSSL FRSFLLVICV FVIPSLSSDS DPLQDFCVGD LKASPSINGF PCKSSVSASD FFFSGLGGPL NTSTPNGVAV SPANVLTFPG LNTLGLSMNN
101: VEFAPGGVNP PHSHPRATEA GVVIEGSVFV GFLTTNNTLF SKVLNAGEMF VVPRGLVHFQ WNVGKVKARL ITSFNSQLPG SAVLPSTLFG SNPTIPNAVL
201: TKTFRTDDVT VNKLKSKFAV

Arabidopsis Description

At1g18980 [Source:UniProtKB/TrEMBL;Acc:Q29PR5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.