Factsheet for AT1G18970.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 6
vacuole 5
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G18980.1	Thale cress	extracellular	84.55	84.55
CDY19265	Canola	extracellular	81.36	83.64
CDY26706	Canola	extracellular	80.45	82.71
Bra025704.1-P	Field mustard	extracellular	79.55	81.78
Solyc03g113580.1.1	Tomato	vacuole	58.64	59.45
PGSC0003DMT400063166	Potato	vacuole	57.73	58.53
PGSC0003DMT400063164	Potato	vacuole	58.18	58.18
Solyc03g113570.1.1	Tomato	vacuole	56.82	56.82
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	54.55	52.63
AT1G09560.1	Thale cress	extracellular	51.36	51.6
Os03t0804700-00	Rice	plastid	51.82	50.67
AT1G74820.1	Thale cress	extracellular	51.82	50.22
Zm00001d034514_P001	Maize	extracellular	50.0	48.25
EER93258	Sorghum	endoplasmic reticulum, extracellular	49.55	46.78
Os03t0804500-01	Rice	extracellular	49.55	46.78
TraesCS5D01G464000.1	Wheat	extracellular	48.64	46.52
TraesCS5B01G462200.1	Wheat	extracellular, vacuole	48.64	46.52
TraesCS5A01G453200.1	Wheat	extracellular	48.64	46.52
AT3G62020.1	Thale cress	extracellular, vacuole	46.36	46.36
AT3G05930.1	Thale cress	extracellular	44.09	44.29
AT1G02335.1	Thale cress	extracellular, vacuole	43.18	43.38
AT1G72610.1	Thale cress	extracellular, vacuole	38.64	40.87
AT5G26700.1	Thale cress	extracellular, vacuole	38.18	39.44
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	49.55	37.46
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	35.0	36.49
AT1G10460.1	Thale cress	extracellular, vacuole	34.55	35.02
AT3G10080.2	Thale cress	mitochondrion	40.0	29.53

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EntrezGene:838478	ProteinID:AAF79304.1	ProteinID:AEE29785.1	ArrayExpress:AT1G18970
EnsemblPlantsGene:AT1G18970	RefSeq:AT1G18970	TAIR:AT1G18970	RefSeq:AT1G18970-TAIR-G	EnsemblPlants:AT1G18970.1	TAIR:AT1G18970.1
EMBL:BT024837	InterPro:Cupin_1	Symbol:GLP4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	GO:GO:0048046	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	RefSeq:NP_564067.2
UniProt:P92995	PFAM:PF00190	PO:PO:0009005	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF46	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
EMBL:U75187	UniParc:UPI000012B7FC	SEG:seg	:	:	:

Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]

Coordinates

chr1:-:6554496..6555610

Molecular Weight (calculated)

23215.0 Da

IEP (calculated)

7.443

GRAVY (calculated)

0.326

Length

220 amino acids

Sequence
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.