Factsheet for AT1G18980.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 4
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21688	Canola	extracellular	88.18	90.65
Bra031058.1-P	Field mustard	extracellular	87.73	90.19
CDX81907	Canola	extracellular	87.27	89.72
AT1G18970.1	Thale cress	extracellular, vacuole	84.55	84.55
Solyc03g113580.1.1	Tomato	vacuole	60.91	61.75
PGSC0003DMT400063166	Potato	vacuole	60.91	61.75
PGSC0003DMT400063164	Potato	vacuole	59.55	59.55
Solyc03g113570.1.1	Tomato	vacuole	58.64	58.64
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	56.36	54.39
AT1G74820.1	Thale cress	extracellular	53.64	51.98
Os03t0804700-00	Rice	plastid	50.45	49.33
AT1G09560.1	Thale cress	extracellular	49.09	49.32
AT3G62020.1	Thale cress	extracellular, vacuole	48.18	48.18
Zm00001d034514_P001	Maize	extracellular	49.09	47.37
AT1G02335.1	Thale cress	extracellular, vacuole	46.82	47.03
EER93258	Sorghum	endoplasmic reticulum, extracellular	49.55	46.78
TraesCS5A01G453200.1	Wheat	extracellular	48.18	46.09
TraesCS5B01G462200.1	Wheat	extracellular, vacuole	48.18	46.09
TraesCS5D01G464000.1	Wheat	extracellular	48.18	46.09
Os03t0804500-01	Rice	extracellular	48.18	45.49
AT3G05930.1	Thale cress	extracellular	45.0	45.21
AT1G72610.1	Thale cress	extracellular, vacuole	39.55	41.83
AT5G26700.1	Thale cress	extracellular, vacuole	40.0	41.31
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	36.36	37.91
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	48.64	36.77
AT1G10460.1	Thale cress	extracellular, vacuole	34.09	34.56
AT3G10080.2	Thale cress	mitochondrion	39.09	28.86

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EntrezGene:838479	UniProt:A0A178WFI0	ProteinID:AAF79303.1	ProteinID:AEE29786.1
ArrayExpress:AT1G18980	EnsemblPlantsGene:AT1G18980	RefSeq:AT1G18980	TAIR:AT1G18980	RefSeq:AT1G18980-TAIR-G	EnsemblPlants:AT1G18980.1
TAIR:AT1G18980.1	EMBL:AY084870	EMBL:BT024841	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312
GO:GO:0045735	GO:GO:0046872	GO:GO:0048046	InterPro:Germin	InterPro:IPR014710	RefSeq:NP_173332.1
ProteinID:OAP16275.1	PFAM:PF00190	PO:PO:0000230	PO:PO:0007611	PO:PO:0009005	PO:PO:0009046
PO:PO:0020100	PO:PO:0025195	PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF46	UniProt:Q29PR5
UniProt:Q9LMC9	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
UniParc:UPI00000013E7	SEG:seg	:	:	:	:

Description

At1g18980 [Source:UniProtKB/TrEMBL;Acc:Q29PR5]

Coordinates

chr1:-:6557181..6558115

Molecular Weight (calculated)

23184.9 Da

IEP (calculated)

8.940

GRAVY (calculated)

0.306

Length

220 amino acids

Sequence
(BLAST)

001: MTTLQISSSL FRSFLLVICV FVIPSLSSDS DPLQDFCVGD LKASPSINGF PCKSSVSASD FFFSGLGGPL NTSTPNGVAV SPANVLTFPG LNTLGLSMNN
101: VEFAPGGVNP PHSHPRATEA GVVIEGSVFV GFLTTNNTLF SKVLNAGEMF VVPRGLVHFQ WNVGKVKARL ITSFNSQLPG SAVLPSTLFG SNPTIPNAVL
201: TKTFRTDDVT VNKLKSKFAV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.