Factsheet for Zm00001d008210_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040519_P001	Maize	extracellular	90.19	88.53
EES02802	Sorghum	extracellular	90.19	88.13
Os01t0284500-01	Rice	extracellular	82.71	81.94
TraesCS6B01G421300.1	Wheat	cytosol, extracellular, plastid	69.16	78.72
TraesCS6A01G382000.1	Wheat	cytosol	44.39	77.87
HORVU6Hr1G089510.1	Barley	extracellular	78.5	77.78
TraesCS6B01G422100.1	Wheat	extracellular	78.04	77.31
TraesCS6A01G382200.1	Wheat	extracellular	78.04	77.31
TraesCS6D01G367000.1	Wheat	extracellular, plasma membrane, vacuole	77.57	76.85
TraesCS6B01G420700.1	Wheat	extracellular	77.1	76.39
TraesCS6B01G422000.1	Wheat	extracellular	77.1	76.39
TraesCS6A01G382900.1	Wheat	extracellular	77.1	76.39
TraesCSU01G088800.1	Wheat	cytosol	43.46	76.23
TraesCS6A01G383000.1	Wheat	extracellular	76.64	75.93
TraesCS6D01G367700.1	Wheat	extracellular	76.64	75.93
TraesCS6A01G382100.1	Wheat	extracellular, plasma membrane, vacuole	75.7	75.0
TraesCS6D01G367800.1	Wheat	extracellular	74.77	74.07
TraesCS6D01G366900.1	Wheat	vacuole	73.36	74.06
HORVU6Hr1G089570.3	Barley	extracellular, vacuole	76.17	73.76
TraesCS6D01G366700.1	Wheat	extracellular, plasma membrane, vacuole	72.9	73.58
HORVU6Hr1G089450.1	Barley	extracellular	73.83	73.15
TraesCS6B01G421200.1	Wheat	extracellular	73.36	72.69
TraesCS6B01G420800.1	Wheat	extracellular	72.43	71.76
Zm00001d038137_P001	Maize	extracellular	65.42	61.67
Zm00001d018954_P002	Maize	extracellular	65.42	60.61
Zm00001d011853_P001	Maize	extracellular	63.55	60.18
Zm00001d042082_P001	Maize	extracellular	58.41	60.1
Zm00001d033583_P001	Maize	extracellular	48.13	45.78
Zm00001d043710_P001	Maize	extracellular, vacuole	45.79	44.55
Zm00001d034514_P001	Maize	extracellular	45.79	42.98
Zm00001d032047_P001	Maize	cytosol	35.98	39.9
Zm00001d037513_P001	Maize	plastid	38.32	38.68
Zm00001d027890_P001	Maize	extracellular, vacuole	39.25	36.52
Zm00001d016697_P001	Maize	extracellular	39.25	35.9
Zm00001d032048_P001	Maize	cytosol	20.56	34.11

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	ProteinID:AQK89191.1	ProteinID:AQK89193.1	ProteinID:AQK89195.1	ProteinID:AQK89196.1
UniProt:B4FAV5	EMBL:BT034243	EMBL:BT040898	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF36	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
UniParc:UPI00017B621E	EnsemblPlantsGene:Zm00001d008210	EnsemblPlants:Zm00001d008210_P002	EnsemblPlants:Zm00001d008210_T002	SEG:seg	:

Description

Germin-like protein subfamily 2 member 1

Coordinates

chr8:+:1296796..1298013

Molecular Weight (calculated)

22358.8 Da

IEP (calculated)

7.126

GRAVY (calculated)

0.179

Length

214 amino acids

Sequence
(BLAST)

001: MARIHLYVVA AACAVALALA GDPDMLQDVC VADYASPVKL NGFPCKANVS ADDFFFDGLR SPGNTNNPAG SAVTAANVDK FPGVNTLGVS MARIDYAPGG
101: QNPPHTHPRA TEIIFVLEGT LEVGFLTTAN RLLSKTVATG DVFVFPRGLV HFQQNRGHGP AAVVAAFNSQ LQGTQAIAMT LFGATPPVPT DILAKAFRVG
201: SGEVEHIKAN FAPK

Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)

001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK

Arabidopsis Description

GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.