CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61117	Canola	extracellular	97.25	97.25
CDY05519	Canola	extracellular	89.45	89.45
CDY19762	Canola	extracellular	88.53	88.94
CDX87040	Canola	extracellular	88.07	88.48
AT5G26700.1	Thale cress	extracellular, vacuole	82.57	84.51
CDY05327	Canola	vacuole	74.31	83.51
CDY05213	Canola	extracellular	62.84	62.84
CDY18833	Canola	extracellular	61.93	61.93
CDY49987	Canola	extracellular	61.01	61.01
CDX74123	Canola	extracellular	60.55	60.55
CDY06361	Canola	extracellular	58.26	58.8
CDY22633	Canola	extracellular	57.34	57.87
CDY47579	Canola	extracellular	50.0	57.37
CDY31080	Canola	extracellular	56.42	56.16
CDY50897	Canola	extracellular	56.88	56.11
CDY20692	Canola	extracellular	56.42	55.91
CDX93502	Canola	extracellular	56.88	55.61
CDX76609	Canola	extracellular	53.21	52.73
CDY11392	Canola	extracellular	52.29	51.82
CDX89983	Canola	extracellular, vacuole	51.38	51.38
CDY15231	Canola	extracellular, vacuole	50.92	50.92
CDX81907	Canola	extracellular	40.83	41.59
CDY21688	Canola	extracellular	40.83	41.59
CDY19265	Canola	extracellular	40.37	41.12
CDY26706	Canola	extracellular	40.37	41.12
CDY51841	Canola	extracellular, plasma membrane, vacuole	36.7	37.91
CDY45080	Canola	extracellular, plasma membrane, vacuole	36.7	37.91
CDY16549	Canola	extracellular	35.78	36.97
CDX92448	Canola	extracellular	35.78	36.97
CDX85429	Canola	extracellular	35.78	36.97
CDX70935	Canola	extracellular, vacuole	35.78	36.97
CDY22866	Canola	extracellular	35.78	36.97
CDX68260	Canola	extracellular, vacuole	34.86	36.72
CDY45077	Canola	extracellular	35.32	36.32
CDY27880	Canola	extracellular	35.32	36.32
CDY11164	Canola	extracellular, vacuole	34.4	36.23
CDY45079	Canola	extracellular, vacuole	34.86	34.7
CDX68163	Canola	extracellular	33.95	33.79
CDX96421	Canola	vacuole	33.49	33.64
CDY41321	Canola	extracellular	34.4	33.19
CDY22215	Canola	extracellular	34.4	33.19
CDX72929	Canola	vacuole	33.03	33.18
CDY34891	Canola	vacuole	28.9	33.16
CDY07800	Canola	vacuole	27.98	31.94
CDX85858	Canola	extracellular	32.57	31.0
CDX82141	Canola	vacuole	24.31	23.98

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	GO:A0A078CV09	EnsemblPlants:CDX80572	ProteinID:CDX80572	ProteinID:CDX80572.1
InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145	GO:GO:0045735	EnsemblPlantsGene:GSBRNA2T00133694001
InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EC87DC	SEG:seg	:	:

Description

BnaC07g28720D

Coordinates

chrLK031821:-:1387269..1388634

Molecular Weight (calculated)

23177.1 Da

IEP (calculated)

9.881

GRAVY (calculated)

0.208

Length

218 amino acids

Sequence
(BLAST)

001: MASIATSLVV IVTMLVSAVA VASESNMLQD VCVADLSNAV KVNGYTCKDS TQVTPEHFFF QGLATAAAAS NTSTGAVVTG ATVEKLPGLN TLGLSMSRID
101: YAPNGLNPPH VHPRASEIIF VLEGQLHVGF VTTAGKLVDK YINKGDVFVF PKGLLHFQKN IARSAPASVI AAFDSQLPGT QSLVSSLFGA LPDDILVKSF
201: QFKPKQVKRI KSRYQPKK

Best Arabidopsis Sequence Match ( AT5G26700.1 )
(BLAST)

001: MASFATHLVV VVTMLFVAMA SAEMLQDVCV ADLSNAVKVN GYTCKDSTQI TPEDFYFKGL ANIAATNTST GSVVTGANVE KLPGLNTLGL SMSRIDYAPN
101: GLNPPHVHPR ASEIIFVLEG QLYVGFVTTA GKLIAKNLNK GDVFTFPKGL IHFQKNIANS PASVLAAFDS QLPGTQSLVA SLFGALPDDI LAKSFQLKHK
201: QVKKIKLRYA PKK

Arabidopsis Description

Probable germin-like protein subfamily 2 member 5 [Source:UniProtKB/Swiss-Prot;Acc:O65252]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.