CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036586.1-P	Field mustard	extracellular	99.08	99.08
CDY19762	Canola	extracellular	98.62	98.62
CDY61117	Canola	extracellular	88.94	88.53
CDY05519	Canola	extracellular	88.48	88.07
CDX80572	Canola	extracellular	88.48	88.07
AT5G26700.1	Thale cress	extracellular, vacuole	82.95	84.51
CDY05327	Canola	vacuole	73.73	82.47
CDY18833	Canola	extracellular	61.75	61.47
CDY05213	Canola	extracellular	61.29	61.01
CDY49987	Canola	extracellular	59.45	59.17
CDX74123	Canola	extracellular	58.99	58.72
CDY06361	Canola	extracellular	57.6	57.87
CDY22633	Canola	extracellular	56.68	56.94
CDY47579	Canola	extracellular	49.77	56.84
CDY50897	Canola	extracellular	56.68	55.66
CDX93502	Canola	extracellular	56.68	55.16
CDY31080	Canola	extracellular	55.3	54.79
CDY20692	Canola	extracellular	55.3	54.55
CDX76609	Canola	extracellular	54.38	53.64
CDY11392	Canola	extracellular	53.46	52.73
CDX89983	Canola	extracellular, vacuole	52.53	52.29
CDY15231	Canola	extracellular, vacuole	52.07	51.83
CDX81907	Canola	extracellular	40.09	40.65
CDY21688	Canola	extracellular	40.09	40.65
CDY26706	Canola	extracellular	39.63	40.19
CDY19265	Canola	extracellular	39.63	40.19
CDY45080	Canola	extracellular, plasma membrane, vacuole	37.79	38.86
CDY51841	Canola	extracellular, plasma membrane, vacuole	37.79	38.86
CDX68260	Canola	extracellular, vacuole	36.41	38.16
CDY16549	Canola	extracellular	36.87	37.91
CDY22866	Canola	extracellular	36.87	37.91
CDX92448	Canola	extracellular	36.87	37.91
CDX85429	Canola	extracellular	36.87	37.91
CDX70935	Canola	extracellular, vacuole	36.87	37.91
CDY11164	Canola	extracellular, vacuole	35.94	37.68
CDY27880	Canola	extracellular	36.41	37.26
CDY45077	Canola	extracellular	36.41	37.26
CDY45079	Canola	extracellular, vacuole	36.41	36.07
CDY22215	Canola	extracellular	37.33	35.84
CDY41321	Canola	extracellular	37.33	35.84
CDX96421	Canola	vacuole	35.48	35.48
CDX72929	Canola	vacuole	35.02	35.02
CDX68163	Canola	extracellular	34.1	33.79
CDY34891	Canola	vacuole	29.49	33.68
CDY07800	Canola	vacuole	28.57	32.46
CDX85858	Canola	extracellular	32.72	31.0
CDX82141	Canola	vacuole	25.35	24.89

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	GO:A0A078DCX8	EnsemblPlants:CDX87040	ProteinID:CDX87040	ProteinID:CDX87040.1
InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145	GO:GO:0045735	EnsemblPlantsGene:GSBRNA2T00145925001
InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	UniParc:UPI0004EE4B34	:	:	:	:

Description

BnaC09g03550D

Coordinates

chrLK031849:+:150224..151054

Molecular Weight (calculated)

23035.0 Da

IEP (calculated)

9.569

GRAVY (calculated)

0.212

Length

217 amino acids

Sequence
(BLAST)

001: MASTATHLVV VVTMLVSAMA IAESNMLQDF CVADLSNAVK VNGYTCKDST QVTPEDFYFQ GLATAKAAAN SSTGAIVTGA TVEKLPGLNT LGLSMSRIDY
101: APNGLNPPHV HPRASEVIFV LEGQLYVGFV TTAGKLVAKY INKGEVFVFP KGLLHFQKNI AGSAPASVLA AFDSQLPGTQ SLVASLFGAL PDNILVETFK
201: IKPKQVKTIK SRYQPKK

Best Arabidopsis Sequence Match ( AT5G26700.1 )
(BLAST)

001: MASFATHLVV VVTMLFVAMA SAEMLQDVCV ADLSNAVKVN GYTCKDSTQI TPEDFYFKGL ANIAATNTST GSVVTGANVE KLPGLNTLGL SMSRIDYAPN
101: GLNPPHVHPR ASEIIFVLEG QLYVGFVTTA GKLIAKNLNK GDVFTFPKGL IHFQKNIANS PASVLAAFDS QLPGTQSLVA SLFGALPDDI LAKSFQLKHK
201: QVKKIKLRYA PKK

Arabidopsis Description

Probable germin-like protein subfamily 2 member 5 [Source:UniProtKB/Swiss-Prot;Acc:O65252]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.