Factsheet for Os01t0952100-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G490600.1	Wheat	extracellular	72.77	75.0
TraesCS3D01G490200.1	Wheat	extracellular	72.77	75.0
TraesCS3D01G490100.1	Wheat	extracellular	72.77	74.67
TraesCS3B01G544000.1	Wheat	extracellular	72.77	74.67
Zm00001d038137_P001	Maize	extracellular	71.06	73.57
TraesCS3D01G490300.1	Wheat	extracellular	55.74	72.38
EES02061	Sorghum	extracellular	73.19	72.27
HORVU3Hr1G107910.2	Barley	mitochondrion, vacuole	70.64	66.94
Os03t0651800-00	Rice	extracellular	61.7	65.32
Os01t0952000-02	Rice	extracellular	61.7	65.02
Os01t0284500-01	Rice	extracellular	57.45	62.5
Os01t0249200-01	Rice	extracellular	54.89	56.83
Os05t0277500-01	Rice	extracellular	53.19	56.56
Os01t0705100-00	Rice	extracellular	43.83	45.98
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	44.26	45.81
Os03t0694000-01	Rice	extracellular	43.4	44.54
Os03t0693800-00	Rice	extracellular	43.4	44.54
Os03t0804700-00	Rice	plastid	42.55	44.44
Os03t0693900-00	Rice	extracellular	41.7	43.17
Os03t0804500-01	Rice	extracellular	40.85	41.2
Os08t0460000-01	Rice	extracellular	36.17	39.91
Os02t0532500-01	Rice	extracellular	36.6	37.55
Os08t0459700-00	Rice	extracellular	32.77	35.16
Os03t0179100-00	Rice	extracellular, vacuole	32.34	33.78
Os04t0288100-00	Rice	mitochondrion	28.51	27.02

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EntrezGene:4325744	ProteinID:BAB64691.1	ProteinID:BAF07331.1	ProteinID:BAS76250.1
InterPro:Cupin_1	ProteinID:EAZ14852.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0010497	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735	GO:GO:0046872
GO:GO:0048046	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	EnsemblPlantsGene:Os01g0952100
EnsemblPlants:Os01t0952100-00	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF23
UniProt:Q942A7	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00000A3630	RefSeq:XP_015644512.1	:	:	:

Description

GERMIN-LIKE PROTEIN 1-5Similar to Germin-like protein subfamily 2 member 4 precursor. (Os01t0952100-00)

Coordinates

chr1:+:41917701..41919058

Molecular Weight (calculated)

24395.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

0.282

Length

235 amino acids

Sequence
(BLAST)

001: MAAKLPTVVL LASFAAVILS LAAPLLAGDP DMLQDICVAD YKSLQGPLRV NGFPCKPEAN VTAEDFFFPG LGKPADVYSG NPMGSAVTAA TVERIPGLNT
101: LGVSMARVDY APWGGANPPH SHPRATEILF VADGLLEVGF VVATAAPASS RLITRVVPKG GVFVFPRGLL HYERSVGEKP AVAISAFDSQ LPGTQAAADA
201: LFGSSSPAVP TDVLARAFQV DGGVVENIKS KFQHK

Best Arabidopsis Sequence Match ( AT1G02335.1 )
(BLAST)

001: MMNSRISIII ALSCIMITSI RAYDPDALQD LCVADKSHGT KLNGFPCKET LNITESDFFF AGISKPAVIN STMGSAVTGA NVEKIPGLNT LSVSLARIDY
101: APGGLNPPHT HPRATEVVYV LEGELEVGFI TTANKLFTKT IKIGEVFVFP RGLVHFQKNN GKSPASVLSA FNSQLPGTAS VAATLFAAEP ALPEDVLTKT
201: FQVGSKMVDK IKERLATKK

Arabidopsis Description

GL22Germin-like protein subfamily 2 member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ27]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.