Factsheet for Solyc05g005160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035064	Potato	cytosol	97.64	97.64
Solyc04g039670.2.1	Tomato	unclear	91.25	91.69
KRH43605	Soybean	cytosol	90.07	90.07
KRH69592	Soybean	nucleus	89.83	89.83
KRH74568	Soybean	endoplasmic reticulum	89.36	89.36
KRH13833	Soybean	cytosol	89.13	89.13
CDY40500	Canola	cytosol	88.65	88.65
CDY70177	Canola	cytosol	88.65	88.65
CDY54767	Canola	cytosol	88.42	88.42
Bra027127.1-P	Field mustard	cytosol	88.18	88.18
AT1G60810.2	Thale cress	cytosol	87.47	87.47
Bra018425.1-P	Field mustard	cytosol	86.52	86.52
AT1G10670.3	Thale cress	cytosol	87.23	83.3
VIT_01s0127g00260.t01	Wine grape	plastid	91.25	83.01
Solyc01g101040.2.1	Tomato	plastid	82.98	82.98
CDY20608	Canola	cytosol	86.52	82.25
CDY20965	Canola	cytosol	86.52	81.33
Zm00001d037566_P002	Maize	plastid	7.57	41.56

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003878	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009346	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013815	InterPro:IPR016102	UniProt:K4BW47
PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	SUPFAM:SSF52210	SUPFAM:SSF56059
EnsemblPlantsGene:Solyc05g005160.2	EnsemblPlants:Solyc05g005160.2.1	InterPro:Succinyl-CoA_synth-like	UniParc:UPI0002766C37	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:141208..145022

Molecular Weight (calculated)

46489.1 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.102

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RLGGYDLAIK SAQVTESTDI NELAEKEPWL NSTKLVVKPD MLFGKRGKSG LVALNLDLAQ VATFVKERLG KEVEMGGCKG
101: PITTFIVEPF IPHNEEFYLN IVSDRLGCSV SFSECGGIDI EENWDKVKTI SVPTGTSFTS EICAPLVATL PLEIKGVIEE FLKVIYALFQ DLDFTFLEMN
201: PFALVEGKPY PLDMRGELDD TAAFKNFKKW GNIEFPLPFG RVMSATESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATANPDG RKRALVIGGG IANFTDVAAT FSGIIRALKE KESKLKAARM HIYVRRGGPN YQKGLAKMRS LGEEIGIPIE
401: VYGPEETMTG ICKQAIECIS AAA

Best Arabidopsis Sequence Match ( AT1G60810.2 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-2ATP-citrate synthase alpha chain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O22718]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.