Factsheet for Solyc01g101040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047154	Potato	cytosol	99.53	99.53
VIT_14s0060g00550.t01	Wine grape	cytosol	92.44	92.44
GSMUA_Achr11P...	Banana	cytosol	91.73	91.73
KRG96682	Soybean	cytosol	45.15	91.39
CDY31092	Canola	cytosol	91.49	91.27
GSMUA_Achr1P15970_001	Banana	mitochondrion	91.02	91.02
EES16175	Sorghum	cytosol	90.78	91.0
AT1G09430.1	Thale cress	cytosol	90.54	90.33
TraesCS5D01G097100.1	Wheat	golgi, unclear	90.31	90.31
Os12t0566300-01	Rice	plastid	90.31	90.31
GSMUA_Achr8P06210_001	Banana	cytosol	90.31	90.31
Os11t0696200-01	Rice	cytosol	90.31	90.31
KRH68403	Soybean	mitochondrion	90.31	90.31
HORVU5Hr1G022100.2	Barley	cytosol	90.31	90.31
Bra030777.1-P	Field mustard	cytosol	90.31	90.09
TraesCS5A01G084700.1	Wheat	unclear	90.07	90.07
TraesCS5B01G090600.1	Wheat	cytosol	90.07	90.07
Zm00001d041593_P001	Maize	extracellular, plasma membrane	89.6	89.81
EES09011	Sorghum	cytosol	88.89	88.89
HORVU4Hr1G028600.1	Barley	cytosol	87.94	88.15
CDY31089	Canola	plastid	42.79	87.86
TraesCS4D01G142600.1	Wheat	cytosol	88.18	86.95
CDY32179	Canola	cytosol	87.47	86.85
TraesCS4B01G144000.2	Wheat	cytosol	87.94	86.31
TraesCS4A01G172800.1	Wheat	cytosol	87.71	86.08
Zm00001d048627_P001	Maize	extracellular, plasma membrane	89.13	83.22
Solyc05g005160.2.1	Tomato	unclear	82.98	82.98
Solyc04g039670.2.1	Tomato	unclear	79.43	79.81
Os11t0693800-01	Rice	plasma membrane	48.94	79.62
CDY67155	Canola	cytosol	29.55	77.64
Zm00001d018888_P001	Maize	cytosol	29.31	70.86
Zm00001d018129_P002	Maize	extracellular	14.89	70.0
Zm00001d031177_P001	Maize	cytosol	30.02	67.55
HORVU5Hr1G013770.1	Barley	cytosol	25.53	65.45
Zm00001d050894_P001	Maize	cytosol	30.73	65.33
Zm00001d010708_P001	Maize	extracellular	17.73	39.89

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003878	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009346	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013815	InterPro:IPR016102	UniProt:K4B1D4
PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059
EnsemblPlantsGene:Solyc01g101040.2	EnsemblPlants:Solyc01g101040.2.1	InterPro:Succinyl-CoA_synth-like	UniParc:UPI00027678C4	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:90899702..90904531

Molecular Weight (calculated)

46485.2 Da

IEP (calculated)

5.135

GRAVY (calculated)

-0.056

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLREHLK RLAGIDLQIC SAQVTESTDF TELTNKEPWL SSTKLVVKPD MLFGKRGKSG LVALNLDLAG VAEFVKTRLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGCTI SFSECGGIEI EENWDKVKTI FLPTEKPMTL EACAPLIATL PLEVRGKIGN FLMGVFDVFQ DLDFSFIEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFKKW GSIEFPLPFG RVLSPTESFI HSLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV LDCATANPDG RKRALIVGGG IANFTDVAAT FNGIIRALRE KEAKLKAARM HIYVRRGGPN YQTGLAKMRA LGEELGVPLE
401: VYGPEATMTG ICKGAIDCIM SEA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.