Factsheet for GSMUA_Achr1P15970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047154	Potato	cytosol	91.02	91.02
Solyc01g101040.2.1	Tomato	plastid	91.02	91.02
VIT_14s0060g00550.t01	Wine grape	cytosol	90.07	90.07
HORVU5Hr1G022100.2	Barley	cytosol	90.07	90.07
TraesCS5D01G097100.1	Wheat	golgi, unclear	89.83	89.83
Os11t0696200-01	Rice	cytosol	89.83	89.83
EES16175	Sorghum	cytosol	89.6	89.81
TraesCS5B01G090600.1	Wheat	cytosol	89.6	89.6
TraesCS5A01G084700.1	Wheat	unclear	89.6	89.6
Os12t0566300-01	Rice	plastid	89.36	89.36
GSMUA_Achr11P...	Banana	cytosol	89.36	89.36
Zm00001d041593_P001	Maize	extracellular, plasma membrane	88.89	89.1
KRG96682	Soybean	cytosol	43.97	89.0
CDY31092	Canola	cytosol	88.89	88.68
HORVU4Hr1G028600.1	Barley	cytosol	88.18	88.39
GSMUA_Achr8P06210_001	Banana	cytosol	88.18	88.18
KRH68403	Soybean	mitochondrion	87.94	87.94
EES09011	Sorghum	cytosol	87.94	87.94
Bra030777.1-P	Field mustard	cytosol	87.94	87.74
AT1G09430.1	Thale cress	cytosol	87.23	87.03
TraesCS4D01G142600.1	Wheat	cytosol	87.94	86.71
TraesCS4B01G144000.2	Wheat	cytosol	87.71	86.08
TraesCS4A01G172800.1	Wheat	cytosol	87.47	85.85
CDY31089	Canola	plastid	41.37	84.95
CDY32179	Canola	cytosol	84.87	84.27
Zm00001d048627_P001	Maize	extracellular, plasma membrane	88.89	83.0
Os11t0693800-01	Rice	plasma membrane	48.94	79.62
CDY67155	Canola	cytosol	28.84	75.78
Zm00001d018888_P001	Maize	cytosol	28.84	69.71
Zm00001d018129_P002	Maize	extracellular	14.42	67.78
Zm00001d031177_P001	Maize	cytosol	30.02	67.55
HORVU5Hr1G013770.1	Barley	cytosol	25.3	64.85
Zm00001d050894_P001	Maize	cytosol	30.02	63.82
Zm00001d010708_P001	Maize	extracellular	17.26	38.83

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr1G15970_001
EnsemblPlants:GSMUA_Achr1P15970_001	EnsemblPlants:GSMUA_Achr1T15970_001	InterPro:IPR013815	InterPro:IPR016102	UniProt:M0S0A5	PFAM:PF08442
PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like
UniParc:UPI0002958965	SEG:seg	:	:	:	:

Description

Putative ATP-citrate synthase [Source:GMGC_GENE;Acc:GSMUA_Achr1G15970_001]

Coordinates

chr1:-:11971357..11976527

Molecular Weight (calculated)

46731.4 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.074

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKQHLK RLAAIDLQLC SAQVTQSTDF TELVNQEPWL SSMKLVVKPD MLFGKRGKSG LVSLNLDLAE VAEFVKKRFG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGCSI SFSECGGIEI EDNWDKVKTI FLPTEKPMTS EACAPLIATL PLEVRGKIGD FIRGVFAVFQ DLDFSFIEMN
201: PFTFVNGEPY PLDMRGELDD TAAFKNFNKW GNIEFPLPFG RVLSPAESYI HELDEKTSAS LKFTILNPKG RIWTMVAGGG ASVIYADTVG DLGYALELGN
301: YAEYSGAPNE EEVLQYARVV LDCATADPDG RKRALLIGGG IANFTDVATT FNGIIRALRE KEAKLKAARV HIYVRRGGPN YQTGLAKMRS LGDEIGIPLE
401: VYGPEATMTG ICKQAIDCIM SAA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.