Factsheet for VIT_14s0060g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g101040.2.1	Tomato	plastid	92.44	92.44
PGSC0003DMT400047154	Potato	cytosol	92.44	92.44
KRG96682	Soybean	cytosol	45.15	91.39
GSMUA_Achr11P...	Banana	cytosol	91.02	91.02
CDY31092	Canola	cytosol	91.02	90.8
Os11t0696200-01	Rice	cytosol	90.31	90.31
KRH68403	Soybean	mitochondrion	90.31	90.31
GSMUA_Achr8P06210_001	Banana	cytosol	90.07	90.07
GSMUA_Achr1P15970_001	Banana	mitochondrion	90.07	90.07
Bra030777.1-P	Field mustard	cytosol	90.07	89.86
AT1G09430.1	Thale cress	cytosol	90.07	89.86
HORVU5Hr1G022100.2	Barley	cytosol	89.83	89.83
TraesCS5D01G097100.1	Wheat	golgi, unclear	89.6	89.6
TraesCS5B01G090600.1	Wheat	cytosol	89.36	89.36
TraesCS5A01G084700.1	Wheat	unclear	89.36	89.36
EES09011	Sorghum	cytosol	88.89	88.89
EES16175	Sorghum	cytosol	88.65	88.86
Os12t0566300-01	Rice	plastid	88.65	88.65
HORVU4Hr1G028600.1	Barley	cytosol	87.94	88.15
Zm00001d041593_P001	Maize	extracellular, plasma membrane	87.71	87.91
TraesCS4D01G142600.1	Wheat	cytosol	88.18	86.95
CDY32179	Canola	cytosol	87.23	86.62
TraesCS4B01G144000.2	Wheat	cytosol	88.18	86.54
CDY31089	Canola	plastid	42.08	86.41
TraesCS4A01G172800.1	Wheat	cytosol	87.71	86.08
Zm00001d048627_P001	Maize	extracellular, plasma membrane	88.89	83.0
Os11t0693800-01	Rice	plasma membrane	48.94	79.62
CDY67155	Canola	cytosol	29.55	77.64
VIT_01s0127g00260.t01	Wine grape	plastid	83.69	76.13
Zm00001d018888_P001	Maize	cytosol	29.31	70.86
Zm00001d018129_P002	Maize	extracellular	14.66	68.89
Zm00001d031177_P001	Maize	cytosol	30.5	68.62
HORVU5Hr1G013770.1	Barley	cytosol	25.53	65.45
Zm00001d050894_P001	Maize	cytosol	30.5	64.82
Zm00001d010708_P001	Maize	extracellular	17.02	38.3

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:100240939	wikigene:100240939	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1
EMBL:AM432372	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	ProteinID:CAN64797	ProteinID:CAN64797.1	ProteinID:CBI39653
ProteinID:CBI39653.3	InterPro:Citrate-bd	UniProt:D7UA89	EMBL:FN596746	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006085	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009346	GO:GO:0009987	GO:GO:0016740
InterPro:IPR013815	InterPro:IPR016102	EntrezGene:LOC100240939	wikigene:LOC100240939	PFAM:PF08442	PFAM:PF16114
PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	TIGR:TC56670
TIGR:TC60148	UniParc:UPI00015C9CF5	ArrayExpress:VIT_14s0060g00550	EnsemblPlantsGene:VIT_14s0060g00550	EnsemblPlants:VIT_14s0060g00550.t01	unigene:Vvi.7644
RefSeq:XP_002280514	RefSeq:XP_002280514.1	RefSeq:XP_003633614	RefSeq:XP_003633614.1	RefSeq:XP_010659741.1	RefSeq:XP_010659742.1

Description

No Description!

Coordinates

chr14:-:479295..484182

Molecular Weight (calculated)

46435.0 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.107

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKDHLK RLAGIDLQIC SAQVTEATDF AELTNKEPWL SSTRLVVKPD MLFGKRGKSG LVALNLDLAQ VAEFVKARLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI NLPTEKPMTP ETCAPLIATL PLEVRGKIGD FIKGAFAVFQ DLDFSFLEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFKTW GNIEFPLPFG RVLSPTEGYI HSLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV LDCATADPDG RKRALLIGGG IANFTDVAAT FNGIVRALKE KESKLKASRM HIYVRRGGPN YQTGLARMRA LGEELGIPLE
401: VYGPEATMTG ICKQAIDCIM STA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.