Factsheet for Os12t0566300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16175	Sorghum	cytosol	95.27	95.5
Zm00001d041593_P001	Maize	extracellular, plasma membrane	95.04	95.26
HORVU5Hr1G022100.2	Barley	cytosol	94.09	94.09
TraesCS5D01G097100.1	Wheat	golgi, unclear	93.85	93.85
TraesCS5B01G090600.1	Wheat	cytosol	93.62	93.62
TraesCS5A01G084700.1	Wheat	unclear	93.62	93.62
Os11t0696200-01	Rice	cytosol	93.14	93.14
KRG96682	Soybean	cytosol	45.15	91.39
Solyc01g101040.2.1	Tomato	plastid	90.31	90.31
GSMUA_Achr11P...	Banana	cytosol	90.07	90.07
PGSC0003DMT400047154	Potato	cytosol	89.83	89.83
GSMUA_Achr1P15970_001	Banana	mitochondrion	89.36	89.36
VIT_14s0060g00550.t01	Wine grape	cytosol	88.65	88.65
KRH68403	Soybean	mitochondrion	88.65	88.65
GSMUA_Achr8P06210_001	Banana	cytosol	88.42	88.42
CDY31092	Canola	cytosol	87.94	87.74
Bra030777.1-P	Field mustard	cytosol	86.76	86.56
AT1G09430.1	Thale cress	cytosol	86.52	86.32
CDY31089	Canola	plastid	41.84	85.92
CDY32179	Canola	cytosol	84.4	83.8
Os11t0693800-01	Rice	plasma membrane	50.35	81.92
CDY67155	Canola	cytosol	29.08	76.4
HORVU5Hr1G013770.1	Barley	cytosol	26.24	67.27

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	EntrezGene:4352549	MapMan:5.1.1.2.1	ProteinID:ABA98986.1
EMBL:AK062236	EMBL:AK071114	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	ProteinID:BAF30071.1	ProteinID:BAT17696.1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003878	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009346	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746
InterPro:IPR013815	InterPro:IPR016102	EnsemblPlantsGene:Os12g0566300	EnsemblPlants:Os12t0566300-01	PFAM:PF08442	PFAM:PF16114
PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	UniProt:Q2QNG7	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like
UniParc:UPI0000680DDF	RefSeq:XP_015620598.1	:	:	:	:

Description

ACLA-3Similar to ATP citrate lyase beta (Fragment). (Os12t0566300-01)

Coordinates

chr12:+:23275214..23279087

Molecular Weight (calculated)

46797.5 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.107

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLREHLK RLAAIDLHIL SAQVTESTDF TELVNQEPWL SSMKLVVKPD MLFGKRGKSG LVALNLDLAQ VRQFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGSTI SFSECGGIEI EENWDKVKTV FLPTEKAMTP DACAPLIATL PLEVRTKIGD FIRGVYSVFQ DLDFSFLEMN
201: PFTMVNGEPY PLDMRGELDD TAAFKNFKKW GNIQFPLPFG RVLSPSESFI HELDEKTSSS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV LDCATADPDG RKRALLIGGG IANFTDVAAT FSGIIRALRE KESKLKAARM NIYVRRGGPN YQTGLAKMRT LGAELGVPIE
401: VYGPEATMTG ICKQAIDCIM AEA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.