CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041593_P001	Maize	extracellular, plasma membrane	98.1	98.1
Os12t0566300-01	Rice	plastid	95.5	95.27
TraesCS5D01G097100.1	Wheat	golgi, unclear	94.79	94.56
HORVU5Hr1G022100.2	Barley	cytosol	94.55	94.33
TraesCS5B01G090600.1	Wheat	cytosol	94.55	94.33
TraesCS5A01G084700.1	Wheat	unclear	94.55	94.33
EES09011	Sorghum	cytosol	91.94	91.73
Solyc01g101040.2.1	Tomato	plastid	91.0	90.78
GSMUA_Achr11P...	Banana	cytosol	90.52	90.31
PGSC0003DMT400047154	Potato	cytosol	90.52	90.31
KRG96682	Soybean	cytosol	44.55	89.95
GSMUA_Achr1P15970_001	Banana	mitochondrion	89.81	89.6
CDY31092	Canola	cytosol	89.1	88.68
KRH68403	Soybean	mitochondrion	88.86	88.65
VIT_14s0060g00550.t01	Wine grape	cytosol	88.86	88.65
GSMUA_Achr8P06210_001	Banana	cytosol	88.39	88.18
AT1G09430.1	Thale cress	cytosol	88.15	87.74
Bra030777.1-P	Field mustard	cytosol	87.91	87.5
CDY31089	Canola	plastid	42.42	86.89
CDY32179	Canola	cytosol	85.07	84.27
CDY67155	Canola	cytosol	29.15	76.4
HORVU5Hr1G013770.1	Barley	cytosol	26.54	67.88

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	EntrezGene:8068084	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	UniProt:C5YPW0	InterPro:Citrate-bd	EnsemblPlants:EES16175	ProteinID:EES16175	ProteinID:EES16175.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003878	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006085
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009346
GO:GO:0009987	GO:GO:0016740	InterPro:IPR013815	InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114
PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	MetaCyc:PWY-5172	MetaCyc:PWY-5392	MetaCyc:PWY-5537	MetaCyc:PWY-5538
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7384	EnsemblPlantsGene:SORBI_3008G132700
SUPFAM:SSF52210	SUPFAM:SSF56059	unigene:Sbi.11631	InterPro:Succinyl-CoA_synth-like	UniParc:UPI0001A88588	RefSeq:XP_002442337.1

Description

hypothetical protein

Coordinates

chr8:+:55932919..55936935

Molecular Weight (calculated)

46653.4 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.108

Length

422 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLREHLK RLAGIDLQIL SAQVTQSTDF TELANQEPWL SSMKLVVKPD MLFGKRGKSG LVALNLDLAQ VRQFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGSTI SFSECGGIEI EENWDKVKTI FLPTEKQMTP DACAPLIATL PLEVRTKIGG FIRGVFSVFQ DLDFSFLEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSPSESFI HELDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE EEVLQYARVL LDCATADPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KESKLKAARM NIYVRRGGPN YQTGLAKMRT LGTELGVPIE
401: VYGPEATMTG ICKEAIDCIM AA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.