Factsheet for PGSC0003DMT400047154

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g101040.2.1	Tomato	plastid	99.53	99.53
VIT_14s0060g00550.t01	Wine grape	cytosol	92.44	92.44
GSMUA_Achr11P...	Banana	cytosol	91.73	91.73
KRG96682	Soybean	cytosol	45.15	91.39
CDY31092	Canola	cytosol	91.49	91.27
GSMUA_Achr1P15970_001	Banana	mitochondrion	91.02	91.02
GSMUA_Achr8P06210_001	Banana	cytosol	90.78	90.78
EES16175	Sorghum	cytosol	90.31	90.52
AT1G09430.1	Thale cress	cytosol	90.54	90.33
Os11t0696200-01	Rice	cytosol	90.31	90.31
KRH68403	Soybean	mitochondrion	90.31	90.31
HORVU5Hr1G022100.2	Barley	cytosol	90.31	90.31
TraesCS5D01G097100.1	Wheat	golgi, unclear	90.31	90.31
Bra030777.1-P	Field mustard	cytosol	90.31	90.09
TraesCS5A01G084700.1	Wheat	unclear	90.07	90.07
TraesCS5B01G090600.1	Wheat	cytosol	90.07	90.07
Os12t0566300-01	Rice	plastid	89.83	89.83
Zm00001d041593_P001	Maize	extracellular, plasma membrane	89.13	89.34
EES09011	Sorghum	cytosol	88.42	88.42
HORVU4Hr1G028600.1	Barley	cytosol	87.94	88.15
CDY31089	Canola	plastid	42.79	87.86
TraesCS4D01G142600.1	Wheat	cytosol	88.18	86.95
CDY32179	Canola	cytosol	87.47	86.85
TraesCS4B01G144000.2	Wheat	cytosol	87.94	86.31
TraesCS4A01G172800.1	Wheat	cytosol	87.71	86.08
PGSC0003DMT400035064	Potato	cytosol	83.45	83.45
PGSC0003DMT400065743	Potato	cytosol	82.98	82.98
Zm00001d048627_P001	Maize	extracellular, plasma membrane	88.65	82.78
PGSC0003DMT400075021	Potato	cytosol	76.12	82.14
Os11t0693800-01	Rice	plasma membrane	48.94	79.62
CDY67155	Canola	cytosol	29.55	77.64
Zm00001d018888_P001	Maize	cytosol	29.31	70.86
Zm00001d018129_P002	Maize	extracellular	14.89	70.0
Zm00001d031177_P001	Maize	cytosol	30.02	67.55
Zm00001d050894_P001	Maize	cytosol	30.73	65.33
HORVU5Hr1G013770.1	Barley	cytosol	25.3	64.85
Zm00001d010708_P001	Maize	extracellular	17.73	39.89

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:102588828	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR013815
InterPro:IPR016102	UniProt:M1BK68	PFAM:PF08442	PFAM:PF16114	EnsemblPlantsGene:PGSC0003DMG403018293	PGSC:PGSC0003DMG403018293
EnsemblPlants:PGSC0003DMT400047154	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like
UniParc:UPI00029654C1	RefSeq:XP_006358554.1	SEG:seg	:	:	:

Description

ATP-citrate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG403018293]

Coordinates

chr1:+:78682559..78687384

Molecular Weight (calculated)

46471.3 Da

IEP (calculated)

5.135

GRAVY (calculated)

-0.053

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLAGIDLQIC SAQVTESTDF TELTNKEPWL SSTKLVVKPD MLFGKRGKSG LVALNLDLAG VAEFVKTRLG VEVEMGGCKA
101: PITTFIVEPF IPHDQEYYLS IVSERLGCTI SFSECGGIEI EENWDKVKTI FLPTEKPMTL EACAPLIATL PLEVRGKIGN FLMGVFDVFQ DLDFSFIEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFKKW GSIEFPLPFG RVLSPTESFI HSLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV LDCATANPDG RKRALIVGGG IANFTDVAAT FNGIIRALRE KEAKLKAARM HIYVRRGGPN YQTGLAKMRA LGEELGVPLE
401: VYGPEATMTG ICKGAIDCIM SEA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.