Factsheet for PGSC0003DMT400075021

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065743	Potato	cytosol	99.49	92.2
PGSC0003DMT400035064	Potato	cytosol	95.15	88.18
Solyc04g039670.2.1	Tomato	unclear	92.6	86.22
KRH69592	Soybean	nucleus	90.31	83.69
KRH74568	Soybean	endoplasmic reticulum	89.8	83.22
CDY40500	Canola	cytosol	88.27	81.8
CDY54767	Canola	cytosol	88.27	81.8
CDY70177	Canola	cytosol	88.27	81.8
KRH43605	Soybean	cytosol	88.01	81.56
AT1G60810.2	Thale cress	cytosol	87.76	81.32
KRH13833	Soybean	cytosol	87.76	81.32
Bra027127.1-P	Field mustard	cytosol	87.76	81.32
Bra018425.1-P	Field mustard	cytosol	87.24	80.85
AT1G10670.3	Thale cress	cytosol	87.76	77.65
CDY20608	Canola	cytosol	86.99	76.63
PGSC0003DMT400047154	Potato	cytosol	82.14	76.12
CDY20965	Canola	cytosol	87.24	76.0
VIT_01s0127g00260.t01	Wine grape	plastid	89.29	75.27
Zm00001d037566_P002	Maize	plastid	7.4	37.66

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
InterPro:IPR013815	InterPro:IPR016102	UniProt:M1CUJ1	PFAM:PF08442	PFAM:PF16114	EnsemblPlantsGene:PGSC0003DMG400029179
PGSC:PGSC0003DMG400029179	EnsemblPlants:PGSC0003DMT400075021	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	SUPFAM:SSF52210	SUPFAM:SSF56059
InterPro:Succinyl-CoA_synth-like	UniParc:UPI0002967805	SEG:seg	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029179]

Coordinates

chr7:-:43960722..43964149

Molecular Weight (calculated)

42928.7 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.007

Length

392 amino acids

Sequence
(BLAST)

001: MVITESTDLN ELVEKEPWLS STQLVVKPDM LFGKRGKSGL VALNFDLAQV ASFVKERLGK EVEMSGCKGP ITTFIVEPFV PHNEEFYLNI VSERLGCSVS
101: FSECGGIDIE ENWDKVKTIF VPTGTSFTSE ICAPLVATLP LEIKGVIEEF LKVVYTLFQD LDFTFLEMNP FTLVEGKPYP LDMRGELDDT AAFKNFKKWG
201: NVEFPLPFGR VMSATESFIH GLDEKTSASL KFTVLNPKGR IWTMVAGGGA SVIYADTVGD LGYASELGNY AEYSGAPNEE EVLQYARIVI DCATADPDGR
301: KRALVIGGGI ANFTDVAATC SGIIRALKEK ESKLKAARMH IYVRRGGPNY QKGLAKMRSL GEEIGIPIEV YGPEETMTGI CKQAIECITA AA

Best Arabidopsis Sequence Match ( AT1G60810.2 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-2ATP-citrate synthase alpha chain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O22718]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.