Factsheet for PGSC0003DMT400035064

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005160.2.1	Tomato	unclear	97.64	97.64
PGSC0003DMT400065743	Potato	cytosol	95.74	95.74
PGSC0003DMT400075021	Potato	cytosol	88.18	95.15
KRH43605	Soybean	cytosol	90.78	90.78
KRH69592	Soybean	nucleus	90.31	90.31
KRH13833	Soybean	cytosol	90.31	90.31
KRH74568	Soybean	endoplasmic reticulum	89.83	89.83
CDY40500	Canola	cytosol	87.71	87.71
CDY54767	Canola	cytosol	87.71	87.71
CDY70177	Canola	cytosol	87.71	87.71
AT1G60810.2	Thale cress	cytosol	87.23	87.23
Bra027127.1-P	Field mustard	cytosol	87.23	87.23
Bra018425.1-P	Field mustard	cytosol	86.76	86.76
PGSC0003DMT400047154	Potato	cytosol	83.45	83.45
AT1G10670.3	Thale cress	cytosol	87.23	83.3
VIT_01s0127g00260.t01	Wine grape	plastid	91.02	82.8
CDY20608	Canola	cytosol	87.0	82.7
CDY20965	Canola	cytosol	86.76	81.56
Zm00001d037566_P002	Maize	plastid	7.57	41.56

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:102585745	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	InterPro:IPR013815	InterPro:IPR016102	UniProt:M1B1S3	PFAM:PF08442	PFAM:PF16114
EnsemblPlantsGene:PGSC0003DMG400013485	PGSC:PGSC0003DMG400013485	EnsemblPlants:PGSC0003DMT400035064	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	SUPFAM:SSF52210
SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI000294C0B9	RefSeq:XP_006356423.1	SEG:seg	:

Description

ATP-citrate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400013485]

Coordinates

chr5:+:8974024..8980534

Molecular Weight (calculated)

46548.2 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.083

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RLGGYDLAIK SAQVTESTDI NELAEKEPWL NSTKLVVKPD MLFGKRGKSG LVALNLDLAQ VATFVKERLG KEVEMGGCKG
101: PITTFIVEPF IPHNEEFYLN IVSERLGCSI SFSECGGIDI EENWDKVKTI FVPTGTSFTS EICAPLVATL PLEIKGVIEE FLKVIYTLFQ DLDFTFLEMN
201: PFTLVEGKPY PLDMRGELDD TAAFKNFKKW GNVEFPLPFG RVMSATESFI HGLDEKTSAS LKFTVLNPMG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATANPDG RKRALVIGGG IANFTDVAAT FSGIIRALKE KESKLKAASM NIYVRRGGPN YQKGLAKMRS LGEEIGIPIE
401: VYGPEETMTG ICKQAIECIT AAA

Best Arabidopsis Sequence Match ( AT1G60810.2 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-2ATP-citrate synthase alpha chain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O22718]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.