CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70177	Canola	cytosol	100.0	100.0
CDY54767	Canola	cytosol	99.76	99.76
AT1G60810.2	Thale cress	cytosol	96.45	96.45
CDY20608	Canola	cytosol	94.09	89.44
KRH69592	Soybean	nucleus	89.13	89.13
CDY20965	Canola	cytosol	94.8	89.11
Solyc05g005160.2.1	Tomato	unclear	88.65	88.65
KRH74568	Soybean	endoplasmic reticulum	88.65	88.65
PGSC0003DMT400075021	Potato	cytosol	81.8	88.27
PGSC0003DMT400065743	Potato	cytosol	87.94	87.94
PGSC0003DMT400035064	Potato	cytosol	87.71	87.71
KRH43605	Soybean	cytosol	86.52	86.52
KRH13833	Soybean	cytosol	86.52	86.52
Solyc04g039670.2.1	Tomato	unclear	84.4	84.8
CDY31089	Canola	plastid	40.19	82.52
CDY31092	Canola	cytosol	81.09	80.9
VIT_01s0127g00260.t01	Wine grape	plastid	87.0	79.14
CDY32179	Canola	cytosol	77.54	77.0
CDY67155	Canola	cytosol	27.42	72.05
Zm00001d037566_P002	Maize	plastid	6.86	37.66

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	GO:A0A078HPM4	UniProt:A0A078HPM4
InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	EnsemblPlants:CDY40500	ProteinID:CDY40500	ProteinID:CDY40500.1	ProteinID:CDY70177.1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00069778001	InterPro:IPR013815	InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118
PANTHER:PTHR23118:SF9	MetaCyc:PWY-5172	MetaCyc:PWY-5392	MetaCyc:PWY-5537	MetaCyc:PWY-5538	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7384	SUPFAM:SSF52210	SUPFAM:SSF56059
InterPro:Succinyl-CoA_synth-like	UniPathway:UPA00223	UniParc:UPI0004EE7CE2	SEG:seg	:	:

Description

BnaC09g14580DBnaC09g14580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPM4]

Coordinates

chrLK032472:-:276872..279737

Molecular Weight (calculated)

46696.4 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.140

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQINQETDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAE VATFVKDRLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI SVPTGSSLTP EICAPLVATL PLEIKGELED FIQVIFTLFQ DLDFTFLEMN
201: PFALVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KTRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIYVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIEYIT AAA

Best Arabidopsis Sequence Match ( AT1G60810.2 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-2ATP-citrate synthase alpha chain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O22718]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.