CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43605	Soybean	cytosol	97.64	97.64
KRH69592	Soybean	nucleus	91.49	91.49
KRH74568	Soybean	endoplasmic reticulum	91.25	91.25
PGSC0003DMT400035064	Potato	cytosol	90.31	90.31
Solyc05g005160.2.1	Tomato	unclear	89.13	89.13
PGSC0003DMT400065743	Potato	cytosol	87.94	87.94
PGSC0003DMT400075021	Potato	cytosol	81.32	87.76
Bra018425.1-P	Field mustard	cytosol	87.0	87.0
AT1G60810.2	Thale cress	cytosol	86.76	86.76
CDY70177	Canola	cytosol	86.52	86.52
CDY54767	Canola	cytosol	86.52	86.52
CDY40500	Canola	cytosol	86.52	86.52
Bra027127.1-P	Field mustard	cytosol	86.05	86.05
KRG96682	Soybean	cytosol	42.08	85.17
Solyc04g039670.2.1	Tomato	unclear	83.69	84.09
AT1G10670.3	Thale cress	cytosol	87.47	83.52
CDY20608	Canola	cytosol	86.76	82.47
CDY20965	Canola	cytosol	87.0	81.78
VIT_01s0127g00260.t01	Wine grape	plastid	88.65	80.65
KRH68403	Soybean	mitochondrion	79.91	79.91
Zm00001d037566_P002	Maize	plastid	7.33	40.26

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:100817228	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	EMBL:ACUP02009793
InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	EnsemblPlantsGene:GLYMA_15G267000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006085	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009346	GO:GO:0009987	GO:GO:0016740
UniProt:I1MJH5	InterPro:IPR013815	InterPro:IPR016102	EnsemblPlants:KRH13833	ProteinID:KRH13833	ProteinID:KRH13833.1
ProteinID:KRH13834.1	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	MetaCyc:PWY-5172
MetaCyc:PWY-5392	MetaCyc:PWY-5537	MetaCyc:PWY-5538	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7384	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI000233BE86
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:50328608..50333381

Molecular Weight (calculated)

46755.5 Da

IEP (calculated)

5.273

GRAVY (calculated)

-0.134

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RISGQELPIK SAQVTESTNF SELAEKEPWL LSSKLVVKPD MLFGKRGKSG LVALNLDLAE VDSFVKERLG KEVEMGGCKG
101: PITTFIVEPF IPHNEEFYLN IVSERLGNSI SFSECGGIEI EENWDKVKTV FMPTGVSLTS ESIAPLVATL PLEIKGEIEE FLKVIFTLFQ DLDFTFLEMN
201: PFTLVNGKPY PLDMRGELDD TAAFKNFKKW GNIEFPLPFG RVMSTTEAFI HGLDEKTSAS LKFTVLNPMG RIWTMVAGGG ASVIYADTVG DLGYAPELGN
301: YAEYSGAPKE DEVLQYARVV IDCATSNPDG QKRALVVGGG IANFTDVAAT FSGIIRALKE KEQKLKEAKM HIYVRRGGPN YQKGLAKMRA LGEEIGIPIE
401: VYGPEATMTG ICKQAIQYIT AAA

Best Arabidopsis Sequence Match ( AT1G10670.1 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQINETTDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEYYLN VVSDRLGCSI SFSECGGIEI EENWDKVKTI FLPTGASLTP EICAPLVATL PLEIKAEIEE FIKVIFTLFQ DLDFTFLEMN
201: PFTLVDGSPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRA LGDDIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-1ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.