Factsheet for Solyc04g039670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065743	Potato	cytosol	94.06	93.62
PGSC0003DMT400075021	Potato	cytosol	86.22	92.6
Solyc05g005160.2.1	Tomato	unclear	91.69	91.25
KRH69592	Soybean	nucleus	86.46	86.05
KRH74568	Soybean	endoplasmic reticulum	85.99	85.58
CDY40500	Canola	cytosol	84.8	84.4
CDY54767	Canola	cytosol	84.8	84.4
CDY70177	Canola	cytosol	84.8	84.4
KRH43605	Soybean	cytosol	84.8	84.4
AT1G60810.2	Thale cress	cytosol	84.32	83.92
Bra027127.1-P	Field mustard	cytosol	84.32	83.92
KRH13833	Soybean	cytosol	84.09	83.69
Bra018425.1-P	Field mustard	cytosol	83.85	83.45
AT1G10670.3	Thale cress	cytosol	84.32	80.14
Solyc01g101040.2.1	Tomato	plastid	79.81	79.43
CDY20608	Canola	cytosol	83.37	78.88
CDY20965	Canola	cytosol	83.85	78.44
VIT_01s0127g00260.t01	Wine grape	plastid	85.99	77.85
Zm00001d037566_P002	Maize	plastid	7.13	38.96

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003878	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009346	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013815	InterPro:IPR016102	UniProt:K4BRA5
PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	SUPFAM:SSF52210	SUPFAM:SSF56059
EnsemblPlantsGene:Solyc04g039670.2	EnsemblPlants:Solyc04g039670.2.1	InterPro:Succinyl-CoA_synth-like	UniParc:UPI0002765FFF	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:13010428..13014953

Molecular Weight (calculated)

46795.4 Da

IEP (calculated)

5.421

GRAVY (calculated)

-0.144

Length

421 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RLAGYDLAIK SAQITESTDL NELVEKEPWV SSKKLAVKPD MLFGKRGKSG LVALNPDLAQ VALLLKERLG KEVDMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSV SFSECGGIDI EENWDKVKTI FVPTGTSFTS EICAPLAATL PLEIKGVIEE FLKDVYTLFQ DLDFTFLEMN
201: PFTLVEGKPY PLDMRGELDD TATFKNFKKW GNVEFPLPFG RVMSATESFI HGLDEKTSVS LKFTVLNPKG RIWTMVGGGG ASVIYADNVG DLGYASELGN
301: YTEYSGAPNE EEVLQYARVV IDCATADPYG RKRALVIGWG IANFTDVAAT FSGIIRALKE KEFKLKAARM HIYVRRGGPN YQKGLAKIWS LGEEIGIPIE
401: VYGPEETRTG ICKQAIECIT A

Best Arabidopsis Sequence Match ( AT1G60810.2 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGQELPIR SVQINQETDL NELVEREPWL SSEKLVVKPD MLFGKRGKSG LVALNLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEFYLN IVSDRLGCSI SFSECGGIDI EENWDKVKTI TIPTGASLTF EICAPLVATL PLEIKGELED FIQVIFTLFE DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPMPFG RVMSSTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRS LGDEIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-2ATP-citrate synthase alpha chain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O22718]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.