CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69592	Soybean	nucleus	99.29	99.29
KRH13833	Soybean	cytosol	91.25	91.25
KRH43605	Soybean	cytosol	91.02	91.02
PGSC0003DMT400065743	Potato	cytosol	90.07	90.07
PGSC0003DMT400035064	Potato	cytosol	89.83	89.83
PGSC0003DMT400075021	Potato	cytosol	83.22	89.8
Solyc05g005160.2.1	Tomato	unclear	89.36	89.36
AT1G60810.2	Thale cress	cytosol	88.89	88.89
CDY70177	Canola	cytosol	88.65	88.65
CDY54767	Canola	cytosol	88.65	88.65
CDY40500	Canola	cytosol	88.65	88.65
Bra018425.1-P	Field mustard	cytosol	88.42	88.42
Bra027127.1-P	Field mustard	cytosol	88.18	88.18
AT1G10670.3	Thale cress	cytosol	90.31	86.23
KRG96682	Soybean	cytosol	42.55	86.12
Solyc04g039670.2.1	Tomato	unclear	85.58	85.99
CDY20608	Canola	cytosol	88.65	84.27
CDY20965	Canola	cytosol	88.42	83.11
VIT_01s0127g00260.t01	Wine grape	plastid	89.13	81.08
KRH68403	Soybean	mitochondrion	80.38	80.38
Zm00001d037566_P002	Maize	plastid	7.8	42.86

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	EMBL:ACUP02000049	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	EnsemblPlantsGene:GLYMA_01G028900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009346	GO:GO:0009987	GO:GO:0016740	UniProt:I1J574
InterPro:IPR013815	InterPro:IPR016102	EnsemblPlants:KRH74568	ProteinID:KRH74568	ProteinID:KRH74568.1	PFAM:PF08442
PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	MetaCyc:PWY-5172	MetaCyc:PWY-5392	MetaCyc:PWY-5537
MetaCyc:PWY-5538	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7384
SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI000152A4A6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:3060271..3064492

Molecular Weight (calculated)

46626.3 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.069

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RLSGKELPIK SAQITASTDF TELQEKEPWL SSSKLVVKPD MLFGKRGKSG LVALNLDFAQ VVSFVKERLG KEVEMSGCKG
101: PITTFIVEPF IPHNEEFYLN IVSERLGNSI SFSECGGIEI EDNWDKVKTA FVPTGVSLTS EIVAPLVATL PLEIKGEIEE FLKVVFTLFQ DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSATESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGFASELGN
301: YAEYSGAPKE EEVLQYARVV IDCATANPDD QKRALVIGGG IANFTDVAAT FSGIIRALKE KESKLKAARM HIFVRRGGPN YQKGLALMRA LGEDIGIPIE
401: VYGPEATMTG ICKEAIQFIT AAA

Best Arabidopsis Sequence Match ( AT1G10670.1 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQINETTDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEYYLN VVSDRLGCSI SFSECGGIEI EENWDKVKTI FLPTGASLTP EICAPLVATL PLEIKAEIEE FIKVIFTLFQ DLDFTFLEMN
201: PFTLVDGSPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRA LGDDIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-1ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.