CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74568	Soybean	endoplasmic reticulum	99.29	99.29
KRH13833	Soybean	cytosol	91.49	91.49
KRH43605	Soybean	cytosol	91.25	91.25
PGSC0003DMT400065743	Potato	cytosol	90.54	90.54
PGSC0003DMT400035064	Potato	cytosol	90.31	90.31
PGSC0003DMT400075021	Potato	cytosol	83.69	90.31
Solyc05g005160.2.1	Tomato	unclear	89.83	89.83
AT1G60810.2	Thale cress	cytosol	89.36	89.36
CDY70177	Canola	cytosol	89.13	89.13
CDY54767	Canola	cytosol	89.13	89.13
CDY40500	Canola	cytosol	89.13	89.13
Bra018425.1-P	Field mustard	cytosol	88.89	88.89
Bra027127.1-P	Field mustard	cytosol	88.65	88.65
KRG96682	Soybean	cytosol	43.03	87.08
Solyc04g039670.2.1	Tomato	unclear	86.05	86.46
AT1G10670.3	Thale cress	cytosol	90.31	86.23
CDY20608	Canola	cytosol	89.13	84.72
CDY20965	Canola	cytosol	88.89	83.56
VIT_01s0127g00260.t01	Wine grape	plastid	89.6	81.51
KRH68403	Soybean	mitochondrion	80.85	80.85
Zm00001d037566_P002	Maize	plastid	7.8	42.86

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	EMBL:ACUP02000721	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	EnsemblPlantsGene:GLYMA_02G036300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006085	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009346	GO:GO:0009987	GO:GO:0016740	UniProt:I1JC43
InterPro:IPR013815	InterPro:IPR016102	EnsemblPlants:KRH69592	ProteinID:KRH69592	ProteinID:KRH69592.1	PFAM:PF08442
PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	MetaCyc:PWY-5172	MetaCyc:PWY-5392	MetaCyc:PWY-5537
MetaCyc:PWY-5538	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7384
SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI000233756E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:3341760..3346084

Molecular Weight (calculated)

46614.4 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.067

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHFK RLSGKELPIK SAQITASTDF TELQEKEPWL SSSKLVVKPD MLFGKRGKSG LVALNLDFAQ VVSFVKERLG KEVEMSGCKG
101: PITTFIVEPF IPHNEEFYLN IVSERLGNSI SFSECGGIEI EDNWDKVKTA FVPTGMSLTS EIVAPLVATL PLEIKGEIEE FLKVVFTLFQ DLDFTFLEMN
201: PFTLVDGKPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSATESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGFASELGN
301: YAEYSGAPKE EEVLQYARVV IDCATANPDG QKRALVIGGG IANFTDVAAT FSGIIRALKE KESKLKAARM HIFVRRGGPN YQKGLALMRA LGEEIGIPIE
401: VYGPEATMTG ICKEAIQFIT AAA

Best Arabidopsis Sequence Match ( AT1G10670.1 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQINETTDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEYYLN VVSDRLGCSI SFSECGGIEI EENWDKVKTI FLPTGASLTP EICAPLVATL PLEIKAEIEE FIKVIFTLFQ DLDFTFLEMN
201: PFTLVDGSPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRA LGDDIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-1ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.