CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40500	Canola	cytosol	89.44	94.09
CDY54767	Canola	cytosol	89.44	94.09
CDY70177	Canola	cytosol	89.44	94.09
AT1G10670.3	Thale cress	cytosol	91.46	91.87
CDY20965	Canola	cytosol	92.58	91.56
KRH69592	Soybean	nucleus	84.72	89.13
KRH74568	Soybean	endoplasmic reticulum	84.27	88.65
PGSC0003DMT400035064	Potato	cytosol	82.7	87.0
PGSC0003DMT400075021	Potato	cytosol	76.63	86.99
PGSC0003DMT400065743	Potato	cytosol	82.47	86.76
KRH13833	Soybean	cytosol	82.47	86.76
KRH43605	Soybean	cytosol	82.25	86.52
Solyc05g005160.2.1	Tomato	unclear	82.25	86.52
Solyc04g039670.2.1	Tomato	unclear	78.88	83.37
CDY31089	Canola	plastid	37.53	81.07
CDY31092	Canola	cytosol	75.96	79.72
VIT_01s0127g00260.t01	Wine grape	plastid	82.92	79.35
CDY32179	Canola	cytosol	73.03	76.29
CDY67155	Canola	cytosol	25.84	71.43
Zm00001d037566_P002	Maize	plastid	6.52	37.66

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	GO:A0A078G7N1	UniProt:A0A078G7N1
InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	EnsemblPlants:CDY20608	ProteinID:CDY20608	ProteinID:CDY20608.1	InterPro:Citrate-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00012781001	InterPro:IPR013815
InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	MetaCyc:PWY-5172
MetaCyc:PWY-5392	MetaCyc:PWY-5537	MetaCyc:PWY-5538	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7384	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniPathway:UPA00223
UniParc:UPI0004EEDBBE	SEG:seg	:	:	:	:

Description

BnaC08g14500DBnaC08g14500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7N1]

Coordinates

chrLK032110:-:220054..222580

Molecular Weight (calculated)

49550.0 Da

IEP (calculated)

5.990

GRAVY (calculated)

-0.093

Length

445 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQHFDSFYI CSLILLSCSH KKKLHINQTT DLNELVEKEP WLSSEKLVVK PDMLFGKRGK SGLVALKLDF
101: AEVATFVEER LGKEVEMSGC IGPITTFIVE PFIPHNEEFY LNVVSDRLGY SISFSECGGI EIEENWDKVK TIFLQTGASL APEVCAPLVA TLPLEIKAEI
201: EEFIKVIFTL FQDLDFTFLE MNPFTLVDGK PYPLDMRGEL DDTAAFKNFK KWGDVEFPMP FGRVMSLTES FIHGLDEKTS ASLKFTVLNP KGRIWTMVAG
301: GGASVIYADT VGDLGYASEL GNYAEYSGAP KEDEVLQYAR VVIDCATANP DGKSRALVIG GGIANFTDVA ATFNGIIRAL KEKESKLKAA RMHIYVRRRG
401: PNYQKGLAKM RSLGDEIGVP IEVYGPEATM TGICKEAIQY ITAAA

Best Arabidopsis Sequence Match ( AT1G10670.3 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQADDVFWL HSCFGFSDIR HHVINETTDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAD
101: VATFVKERLG KEVEMSGCKG PITTFIVEPF VPHNEEYYLN VVSDRLGCSI SFSECGGIEI EENWDKVKTI FLPTGASLTP EICAPLVATL PLEIKAEIEE
201: FIKVIFTLFQ DLDFTFLEMN PFTLVDGSPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG
301: ASVIYADTVG DLGYASELGN YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN
401: YQKGLAKMRA LGDDIGVPIE VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-1ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.