Factsheet for VIT_01s0127g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005160.2.1	Tomato	unclear	83.01	91.25
PGSC0003DMT400035064	Potato	cytosol	82.8	91.02
PGSC0003DMT400065743	Potato	cytosol	81.72	89.83
KRH69592	Soybean	nucleus	81.51	89.6
KRH43605	Soybean	cytosol	81.51	89.6
PGSC0003DMT400075021	Potato	cytosol	75.27	89.29
KRH74568	Soybean	endoplasmic reticulum	81.08	89.13
KRH13833	Soybean	cytosol	80.65	88.65
Bra018425.1-P	Field mustard	cytosol	79.57	87.47
AT1G60810.2	Thale cress	cytosol	79.35	87.23
CDY70177	Canola	cytosol	79.14	87.0
CDY54767	Canola	cytosol	79.14	87.0
CDY40500	Canola	cytosol	79.14	87.0
Bra027127.1-P	Field mustard	cytosol	78.71	86.52
Solyc04g039670.2.1	Tomato	unclear	77.85	85.99
VIT_14s0060g00550.t01	Wine grape	cytosol	76.13	83.69
AT1G10670.3	Thale cress	cytosol	79.57	83.52
CDY20608	Canola	cytosol	79.35	82.92
CDY20965	Canola	cytosol	79.57	82.22
Zm00001d037566_P002	Maize	plastid	7.1	42.86

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:100255189	wikigene:100255189	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1
EMBL:AM468006	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	ProteinID:CAN70448	ProteinID:CAN70448.1	ProteinID:CBI28566
ProteinID:CBI28566.3	InterPro:Citrate-bd	UniProt:D7TDJ3	EMBL:FN595761	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006085	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009346	GO:GO:0009987	GO:GO:0016740
InterPro:IPR013815	InterPro:IPR016102	EntrezGene:LOC100255189	wikigene:LOC100255189	PFAM:PF08442	PFAM:PF16114
PANTHER:PTHR23118	PANTHER:PTHR23118:SF9	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	TIGR:TC59768
UniParc:UPI0001BE3158	ArrayExpress:VIT_01s0127g00260	EnsemblPlantsGene:VIT_01s0127g00260	EnsemblPlants:VIT_01s0127g00260.t01	unigene:Vvi.10997	RefSeq:XP_002262914
RefSeq:XP_002262914.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:7629520..7635442

Molecular Weight (calculated)

51490.7 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.067

Length

465 amino acids

Sequence
(BLAST)

001: MVEPLVIVGS CRASKVYCIT VWELVHQKPV RLPFLRLPQR SKMARKKIRE YDSKRLLKEH FKRLSGTDLP IKSAQITEST DFNELAEKEP WLLSGKLVVK
101: PDMLFGKRGK SGLVALNLDL AQVGTFVKER LGKEVEMGGC RGPITTFIVE PFIPHNEEFY LNMVSERLGS SISFSECGGI EIEENWDKVK TIFIPTGATF
201: TSEICSPLVA TLPLEIKGKI EEFIKVVFAL FLDLDFTFLE MNPFTLVDGK PYPLDMRGEL DDTAAFKNFK KWGNIEFPMP FGRVMSPTET FIHGLDEKTS
301: ASLKFTVLNP KGRIWTMVAG GGASVIYADT VGDLGYASEL GNYAEYSGAP NEEEVLQYAR VVIDCATANP DGLKRALVIG GGIANFTDVA ATFNGIIRAL
401: KEKESKLKAS RMHIYVRRGG PNYQRGLAKM RTLGEEIGIP LEVYGPEATM TGICKQAIEC IGAAA

Best Arabidopsis Sequence Match ( AT1G10670.1 )
(BLAST)

001: MARKKIREYD SKRLVKEHFK RLSGKELPIR SVQINETTDL NELVEKEPWL SSEKLVVKPD MLFGKRGKSG LVALKLDFAD VATFVKERLG KEVEMSGCKG
101: PITTFIVEPF VPHNEEYYLN VVSDRLGCSI SFSECGGIEI EENWDKVKTI FLPTGASLTP EICAPLVATL PLEIKAEIEE FIKVIFTLFQ DLDFTFLEMN
201: PFTLVDGSPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVMSPTESFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE DEVLQYARVV IDCATANPDG KSRALVIGGG IANFTDVAAT FNGIIRALKE KEAKLKAARM HIFVRRGGPN YQKGLAKMRA LGDDIGVPIE
401: VYGPEATMTG ICKEAIQYIT AAA

Arabidopsis Description

ACLA-1ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.