Factsheet for HORVU5Hr1G022100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G084700.1	Wheat	unclear	99.53	99.53
TraesCS5D01G097100.1	Wheat	golgi, unclear	99.29	99.29
TraesCS5B01G090600.1	Wheat	cytosol	99.05	99.05
EES16175	Sorghum	cytosol	94.33	94.55
Os12t0566300-01	Rice	plastid	94.09	94.09
Zm00001d041593_P001	Maize	extracellular, plasma membrane	93.85	94.08
Solyc01g101040.2.1	Tomato	plastid	90.31	90.31
PGSC0003DMT400047154	Potato	cytosol	90.31	90.31
GSMUA_Achr1P15970_001	Banana	mitochondrion	90.07	90.07
VIT_14s0060g00550.t01	Wine grape	cytosol	89.83	89.83
GSMUA_Achr11P...	Banana	cytosol	89.6	89.6
KRG96682	Soybean	cytosol	44.21	89.47
HORVU4Hr1G028600.1	Barley	cytosol	89.13	89.34
GSMUA_Achr8P06210_001	Banana	cytosol	88.18	88.18
CDY31092	Canola	cytosol	88.18	87.97
KRH68403	Soybean	mitochondrion	87.71	87.71
AT1G09430.1	Thale cress	cytosol	87.47	87.26
Bra030777.1-P	Field mustard	cytosol	87.0	86.79
CDY32179	Canola	cytosol	85.11	84.51
CDY31089	Canola	plastid	40.66	83.5
CDY67155	Canola	cytosol	27.9	73.29
HORVU5Hr1G013770.1	Barley	cytosol	28.13	72.12

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	EMBL:AK372021	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	UniProt:F2E797	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003878	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006085	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	GO:GO:0048037	EnsemblPlantsGene:HORVU5Hr1G022100	EnsemblPlants:HORVU5Hr1G022100.2
InterPro:IPR013815	InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18
SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI0002007D5C	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E797]

Coordinates

chrchr5H:-:109950305..109954641

Molecular Weight (calculated)

46801.5 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.122

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLAGIDLQIL SAQVTQSTDF TELSNQEPWL SSMKLVVKPD MLFGKRGKSG LVALNLDLAQ VRQFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPTEKPMTL DACAPLIATL PLEVRTKIGD FIRGSFSVFQ DLDFSFMEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFKKW GNIEFPLPFG RVLSPSESYI HELDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE EEVLHYARVV LDCATADPDG RKRALLIGGG IANFTDVAAT FSGIIRALRE KESKLKAARV NIYVRRGGPN YQTGLAKMRA LGSELGLPIE
401: VYGPEATMTG ICKQAIDYVM AEA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.