Factsheet for Zm00001d041593_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16175	Sorghum	cytosol	98.1	98.1
Os12t0566300-01	Rice	plastid	95.26	95.04
HORVU5Hr1G022100.2	Barley	cytosol	94.08	93.85
TraesCS5D01G097100.1	Wheat	golgi, unclear	93.84	93.62
TraesCS5B01G090600.1	Wheat	cytosol	93.6	93.38
TraesCS5A01G084700.1	Wheat	unclear	93.6	93.38
Solyc01g101040.2.1	Tomato	plastid	89.81	89.6
KRG96682	Soybean	cytosol	44.31	89.47
GSMUA_Achr11P...	Banana	cytosol	89.57	89.36
PGSC0003DMT400047154	Potato	cytosol	89.34	89.13
GSMUA_Achr1P15970_001	Banana	mitochondrion	89.1	88.89
KRH68403	Soybean	mitochondrion	87.91	87.71
VIT_14s0060g00550.t01	Wine grape	cytosol	87.91	87.71
CDY31092	Canola	cytosol	87.68	87.26
GSMUA_Achr8P06210_001	Banana	cytosol	87.2	87.0
AT1G09430.1	Thale cress	cytosol	86.97	86.56
Bra030777.1-P	Field mustard	cytosol	86.49	86.08
CDY31089	Canola	plastid	41.47	84.95
Zm00001d048627_P001	Maize	extracellular, plasma membrane	90.28	84.11
CDY32179	Canola	cytosol	84.12	83.33
CDY67155	Canola	cytosol	28.44	74.53
Zm00001d018888_P001	Maize	cytosol	29.15	70.29
Zm00001d018129_P002	Maize	extracellular	14.69	68.89
Zm00001d031177_P001	Maize	cytosol	30.33	68.09
HORVU5Hr1G013770.1	Barley	cytosol	26.3	67.27
Zm00001d050894_P001	Maize	cytosol	30.57	64.82
Zm00001d040984_P001	Maize	cytosol	14.22	61.22
Zm00001d037566_P002	Maize	plastid	7.58	41.56
Zm00001d010708_P001	Maize	extracellular	17.77	39.89

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
EntrezGene:100282948	Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type
InterPro:ATP_grasp_subdomain_1	UniProt:B6TD54	InterPro:Citrate-bd	EMBL:EU962919	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:IPR013815	InterPro:IPR016102	ProteinID:ONM33328.1	PFAM:PF08442
PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like
UniParc:UPI000152A49F	EnsemblPlantsGene:Zm00001d041593	EnsemblPlants:Zm00001d041593_P001	EnsemblPlants:Zm00001d041593_T001	:	:

Description

ATP-citrate synthase

Coordinates

chr3:+:129044635..129048672

Molecular Weight (calculated)

46638.4 Da

IEP (calculated)

5.401

GRAVY (calculated)

-0.091

Length

422 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLREHLK RLAGIDLQIL SAQVTQSTDF TELANQEPWL SSMKLVVKPD MLFGKRGKSG LVALNLDLAQ VRQFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGNTI SFSECGGIEI EENWDKVKTI FLPTEKQMTP DACAPLIATL PLEVRTKIGG FIRAVFSVFQ DLDFSFLEMN
201: PFTLVNGEPY PLDMRGELDD TAAFKNFNKW GNIVFPLPFG RVLSPSESFI HELDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE EEVLQYARVL LDCATSDPDG RKRALLIGGG IANFTDVAST FSGIIRALRE KESKLKAARM NIYVRRGGPN YQTGLAKMRT LGAELGVPIE
401: VYGPEATMTG ICKEAIDCIM AA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.