Factsheet for Zm00001d048627_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09011	Sorghum	cytosol	90.95	97.4
Os11t0696200-01	Rice	cytosol	87.86	94.09
HORVU4Hr1G028600.1	Barley	cytosol	86.09	92.42
TraesCS4B01G144000.2	Wheat	cytosol	86.98	91.42
TraesCS4D01G142600.1	Wheat	cytosol	86.53	91.38
TraesCS4A01G172800.1	Wheat	cytosol	86.75	91.18
Zm00001d041593_P001	Maize	extracellular, plasma membrane	84.11	90.28
GSMUA_Achr11P...	Banana	cytosol	83.66	89.6
Solyc01g101040.2.1	Tomato	plastid	83.22	89.13
KRG96682	Soybean	cytosol	41.06	89.0
GSMUA_Achr1P15970_001	Banana	mitochondrion	83.0	88.89
VIT_14s0060g00550.t01	Wine grape	cytosol	83.0	88.89
PGSC0003DMT400047154	Potato	cytosol	82.78	88.65
GSMUA_Achr8P06210_001	Banana	cytosol	82.12	87.94
KRH68403	Soybean	mitochondrion	81.9	87.71
CDY31092	Canola	cytosol	81.46	87.03
Bra030777.1-P	Field mustard	cytosol	80.57	86.08
AT1G09430.1	Thale cress	cytosol	80.13	85.61
CDY31089	Canola	plastid	38.63	84.95
Os11t0693800-01	Rice	plasma membrane	48.12	83.85
CDY32179	Canola	cytosol	78.15	83.1
Zm00001d018888_P001	Maize	cytosol	30.91	80.0
Zm00001d031177_P001	Maize	cytosol	32.01	77.13
CDY67155	Canola	cytosol	26.93	75.78
Zm00001d018129_P002	Maize	extracellular	15.01	75.56
Zm00001d050894_P001	Maize	cytosol	32.01	72.86
Zm00001d040984_P001	Maize	cytosol	14.13	65.31
Zm00001d037566_P002	Maize	plastid	7.95	46.75
Zm00001d010708_P001	Maize	extracellular	17.22	41.49

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	UniProt:A0A1D6PN41	ProteinID:AQK48281.1
InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1	InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:IPR013815	InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118
PANTHER:PTHR23118:SF18	SUPFAM:SSF52210	SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	UniParc:UPI000842BD5A	EnsemblPlantsGene:Zm00001d048627
EnsemblPlants:Zm00001d048627_P001	EnsemblPlants:Zm00001d048627_T001	SEG:seg	:	:	:

Description

ATP-citrate synthase alpha chain protein 3

Coordinates

chr4:-:1738291..1741618

Molecular Weight (calculated)

50141.6 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.060

Length

453 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLREHLK RLAGIDLTIL SAQITQSTDF AELVSQQPWL STMKLVVKPD MLFGKRGKSG LVALNLDFNQ VKEFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSERLGSTI SFSECGGIEI EENWDKVKTI FLPTEKPMTS DSCAPLIATL PLEVLVAFLL SSNLNTSMLS HFSHWRYSLF
201: ADQARGKIGD FIKGVFAVFL DLDFSFLEMN PFTMVNGEPY PLDMRGELDD TAAFKNFKKW GGIEFPLPFG RVLSPTESFI HELDEKTSAS LKFTVLNPKG
301: RIWTMVAGGG ASVIYADTVG DLGYASELGN YAEYSGAPNE EEVLNYSRVV LDCATADPDG RKRALLIGGG IANFTDVATT FNGIIRALRE KESKLKASRM
401: HIYVRRGGPN YQSGLAKMRK LGAELGVPIE VYGPEATMTG ICKQAIECIM AAA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.