Factsheet for TraesCS4D01G142600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G144000.2	Wheat	cytosol	98.37	97.91
TraesCS4A01G172800.1	Wheat	cytosol	98.14	97.68
HORVU4Hr1G028600.1	Barley	cytosol	95.8	97.39
Os11t0696200-01	Rice	cytosol	93.24	94.56
EES09011	Sorghum	cytosol	92.77	94.09
TraesCS5D01G097100.1	Wheat	golgi, unclear	87.88	89.13
GSMUA_Achr11P...	Banana	cytosol	87.41	88.65
KRG96682	Soybean	cytosol	43.12	88.52
Solyc01g101040.2.1	Tomato	plastid	86.95	88.18
VIT_14s0060g00550.t01	Wine grape	cytosol	86.95	88.18
PGSC0003DMT400047154	Potato	cytosol	86.95	88.18
GSMUA_Achr8P06210_001	Banana	cytosol	86.71	87.94
GSMUA_Achr1P15970_001	Banana	mitochondrion	86.71	87.94
KRH68403	Soybean	mitochondrion	86.48	87.71
CDY31092	Canola	cytosol	85.55	86.56
Zm00001d048627_P001	Maize	extracellular, plasma membrane	91.38	86.53
Bra030777.1-P	Field mustard	cytosol	84.62	85.61
AT1G09430.1	Thale cress	cytosol	84.15	85.14
Os11t0693800-01	Rice	plasma membrane	51.28	84.62
CDY32179	Canola	cytosol	82.98	83.57
CDY31089	Canola	plastid	39.63	82.52
CDY67155	Canola	cytosol	27.74	73.91
Zm00001d018888_P001	Maize	cytosol	30.07	73.71
Zm00001d031177_P001	Maize	cytosol	31.24	71.28
Zm00001d050894_P001	Maize	cytosol	31.47	67.84
Zm00001d018129_P002	Maize	extracellular	13.99	66.67
Zm00001d010708_P001	Maize	extracellular	16.55	37.77

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:IPR013815
InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210
SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	EnsemblPlantsGene:TraesCS4D01G142600	EnsemblPlants:TraesCS4D01G142600.1	:	:

Description

No Description!

Coordinates

chr4D:-:128190485..128193490

Molecular Weight (calculated)

47291.1 Da

IEP (calculated)

5.778

GRAVY (calculated)

-0.096

Length

429 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLAGIDLHIL SAQVTQSTDF AELVNQHPWL STTKLVVKPD MLFGKRGKSG LVALNLDVAQ VKEFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS VVSERLGSTI SFSECGGIEI EENWDKVKTV FLPTEKPMTP DACAPLIATL PLEARGKIGD FIKGVFAVFQ DLDFSFIEMN
201: PFTMVNGEPY PLDMRGELDD TASFKNFKKW GNLEFPLPFG RVLSSTESFI HELDDKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTFS LVCQVGDLGY
301: ASELGNYAEY SGAPNQEEVL QYARVVLDCA TADPDGRKRA LLIGGGIANF TDVAATFSGI IQALREKESK LKASRMHLYV RRGGPNYQTG LAKMRKLGAE
401: IGVPIEVYGP EETMTGICKQ AIECIMAAS

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.