Factsheet for TraesCS5A01G084700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G022100.2	Barley	cytosol	99.53	99.53
TraesCS5D01G097100.1	Wheat	golgi, unclear	99.29	99.29
TraesCS5B01G090600.1	Wheat	cytosol	99.05	99.05
EES16175	Sorghum	cytosol	94.33	94.55
Os12t0566300-01	Rice	plastid	93.62	93.62
Zm00001d041593_P001	Maize	extracellular, plasma membrane	93.38	93.6
PGSC0003DMT400047154	Potato	cytosol	90.07	90.07
Solyc01g101040.2.1	Tomato	plastid	90.07	90.07
GSMUA_Achr1P15970_001	Banana	mitochondrion	89.6	89.6
GSMUA_Achr11P...	Banana	cytosol	89.36	89.36
VIT_14s0060g00550.t01	Wine grape	cytosol	89.36	89.36
KRG96682	Soybean	cytosol	43.97	89.0
CDY31092	Canola	cytosol	88.42	88.21
GSMUA_Achr8P06210_001	Banana	cytosol	87.94	87.94
AT1G09430.1	Thale cress	cytosol	87.71	87.5
KRH68403	Soybean	mitochondrion	87.23	87.23
Bra030777.1-P	Field mustard	cytosol	87.23	87.03
TraesCS4A01G172800.1	Wheat	cytosol	88.42	86.77
CDY32179	Canola	cytosol	85.34	84.74
CDY31089	Canola	plastid	40.9	83.98
CDY67155	Canola	cytosol	27.9	73.29
HORVU5Hr1G013770.1	Barley	cytosol	28.13	72.12

Protein Annotations

KEGG:00020+2.3.3.8	KEGG:00020+6.2.1.5	KEGG:00640+6.2.1.5	KEGG:00660+6.2.1.5	KEGG:00720+2.3.3.8	KEGG:00720+6.2.1.5
Gene3D:3.30.1490.20	Gene3D:3.30.470.20	Gene3D:3.40.50.261	MapMan:5.1.1.2.1	InterPro:ATP-grasp_succ-CoA_synth-type	InterPro:ATP_grasp_subdomain_1
InterPro:Citrate-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:IPR013815
InterPro:IPR016102	PFAM:PF08442	PFAM:PF16114	PANTHER:PTHR23118	PANTHER:PTHR23118:SF18	SUPFAM:SSF52210
SUPFAM:SSF56059	InterPro:Succinyl-CoA_synth-like	EnsemblPlantsGene:TraesCS5A01G084700	EnsemblPlants:TraesCS5A01G084700.1	:	:

Description

No Description!

Coordinates

chr5A:-:110378335..110382772

Molecular Weight (calculated)

46816.6 Da

IEP (calculated)

5.405

GRAVY (calculated)

-0.122

Length

423 amino acids

Sequence
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLAGIDLQIL SAQVTQSTDF TELSNQEPWL SSMKLVVKPD MLFGKRGKSG LVALNLDLAQ VRQFVKERLG VEVEMGGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPTEKPMTL DACAPLIATL PLEVRTKIGD FIRGSFSVFQ DLDFSFMEMN
201: PFTLVKGEPY PLDMRGELDD TAAFKNFKKW GDIEFPLPFG RVLSPSESYI HELDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPKE EEVLHYARVV LDCATADPDG RKRALLIGGG IANFTDVAAT FSGIIRALRE KESKLKAARV NIYVRRGGPN YQTGLAKMRA LGSELGLPIE
401: VYGPEATMTG ICKQAIDYVM AEA

Best Arabidopsis Sequence Match ( AT1G09430.1 )
(BLAST)

001: MARKKIREYD SKRLLKEHLK RLANIDLQIR SAQVTESTDF TELTNQESWL SSTKLVVKPD MLFGKRGKSG LVALKLDLAE VADFVKARLG TEVEMEGCKA
101: PITTFIVEPF VPHDQEYYLS IVSDRLGCTI SFSECGGIEI EENWDKVKTI FLPAEKSMTL EVCAPLIATL PLEVRAKIGN FIMGAFAVFQ DLDFSFMEMN
201: PFTLVDGEPF PLDMRGELDD TAAFKNFNKW GDIEFPLPFG RVLSSTENFI HGLDEKTSAS LKFTVLNPKG RIWTMVAGGG ASVIYADTVG DLGYASELGN
301: YAEYSGAPNE EEVLQYARVV IDCATTDPDG RKRALLIGGG IANFTDVAAT FNGIIRALRE KETRLKASRM HIYVRRGGPN YQTGLARMRA LGEELGVPLE
401: VYGPEATMTG ICKRAIDCIM LPDA

Arabidopsis Description

ACLA-3ATP-citrate synthase alpha chain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O80526]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.