Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G388400.1 | |
| TraesCS1B01G415800.1 | |
| TraesCS1D01G396300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23430.1 | TraesCS1A01G388400.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1B01G415800.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1D01G396300.1 | AT2G33770.1 | 22634761 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G364600.1 | Wheat | plastid | 98.62 | 98.5 |
| TraesCS6A01G379700.1 | Wheat | cytosol | 97.75 | 97.75 |
| TraesCS6B01G418600.1 | Wheat | cytosol, nucleus, plasma membrane | 97.0 | 97.12 |
| HORVU6Hr1G089190.23 | Barley | cytosol | 96.25 | 95.06 |
| HORVU6Hr1G089130.9 | Barley | cytosol | 94.24 | 93.08 |
| Zm00001d051945_P001 | Maize | peroxisome, plasma membrane, plastid | 56.2 | 81.19 |
| Os02t0809800-01 | Rice | cytosol | 81.98 | 80.37 |
| EES07731 | Sorghum | cytosol, nucleus, plasma membrane | 78.97 | 77.71 |
| Zm00001d018445_P004 | Maize | cytosol, nucleus, plasma membrane | 76.97 | 76.4 |
| GSMUA_Achr1P20470_001 | Banana | nucleus | 59.82 | 60.58 |
| CDY09011 | Canola | cytosol, peroxisome, plasma membrane | 44.43 | 59.36 |
| GSMUA_Achr6P36590_001 | Banana | cytosol | 56.2 | 55.23 |
| Bra023727.1-P | Field mustard | cytosol | 53.57 | 54.59 |
| KRH72033 | Soybean | cytosol, extracellular, golgi | 8.51 | 54.4 |
| CDX85098 | Canola | cytosol, peroxisome, plasma membrane | 38.3 | 54.26 |
| VIT_05s0049g01410.t01 | Wine grape | cytosol | 53.94 | 54.08 |
| Bra014948.1-P | Field mustard | cytosol | 52.94 | 53.95 |
| KRH31683 | Soybean | cytosol, nucleus, plasma membrane | 51.44 | 53.8 |
| KRH34432 | Soybean | cytosol | 51.44 | 53.1 |
| KRG92358 | Soybean | cytosol | 51.31 | 52.97 |
| PGSC0003DMT400044207 | Potato | cytosol, nucleus, plasma membrane | 52.19 | 52.78 |
| Solyc09g090360.2.1 | Tomato | cytosol | 51.94 | 52.66 |
| AT3G23430.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.31 | 52.43 |
| KRH69098 | Soybean | cytosol | 50.06 | 52.42 |
| CDX77515 | Canola | cytosol | 52.82 | 51.97 |
| KRH07887 | Soybean | extracellular, golgi, mitochondrion, plasma membrane | 7.13 | 48.72 |
| CDY18123 | Canola | cytosol | 43.8 | 45.87 |
| TraesCS7A01G231200.1 | Wheat | cytosol, peroxisome, plasma membrane | 42.55 | 39.77 |
| CDY09013 | Canola | nucleus | 8.89 | 35.86 |
| TraesCS5A01G062900.1 | Wheat | plasma membrane | 13.02 | 24.53 |
| TraesCS7A01G356800.1 | Wheat | plasma membrane | 13.02 | 24.02 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G380000.1 | EnsemblPlantsGene:TraesCS6A01G380000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:EXS_C |
| InterPro:IPR004331 | InterPro:IPR004342 | InterPro:SPX_dom | ncoils:Coil | PANTHER:PTHR10783 | PANTHER:PTHR10783:SF80 |
| PFAM:PF03105 | PFAM:PF03124 | PFscan:PS51380 | PFscan:PS51382 | SEG:seg | TMHMM:TMhelix |
| MapMan:24.2.7.4 | MapMan:25.3.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:600456807..600461668
Molecular Weight (calculated)
90083.0 Da
IEP (calculated)
9.737
GRAVY (calculated)
-0.062
Length
799 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKFSREYDA SIIPEWKPAF VDYRDLKKLI KRIKVERRDA DDSSSAGDSS PETAALAAGV ESAGYGAGFS VLDPVRALAA RFAPRVQASM DDEESGDSGE
101: LVRSTDKHER EFLEKADEEL EKVSTFYAAQ EAELLGRGEA LIDQLRILAD VKRILADHAA TRRARGSGRG RSVPAVAPPS PALSNSGRYL LSGLATPQSM
201: SDGSVEQQQA QMTEGAAVAD EVMAALERNG VSFVGLPGKK DAKKEGSGRG GRLQLPSTVR IDIPASNPGR AALKVWEELV NVLRKDGADP AAAFVHRKKV
301: QHAEKNIRDA FMALYRGLEL LKKFSSLNVK AFTKILKKFV KVSEQQRATD LFSQKVKRSS FSTSDKVLQL SDEVEALFLK HFAGNDRMVA MKYLNPQQPK
401: NTHMITFLVG LFTGTFVSLF IIYAILAHVS GIFASTGNTA YMEVVYHVFS MFALISLHCF LYGCNLFMWK STRINQNFIF DFAPNTALTH RDAFLMSASI
501: MCTVVAALVI NLFLRNAGAS YANAVPGGLI VLSAGLLLCP FNVFYRSTRY CFMRIMRNIM FSPFYKVLMA DFFMADQLTS QIPLLRHMEF AACYFMAGSF
601: RANPYETCTT SQQYKHLAYV ISFLPYYWRA MQCLRRYIEE HDINQLANAG KYVSAMVAAA VRFKYNVTPT PFWMWMVLIS SSGATVYQLY WDFVKDWGFF
701: TPKSKNLWLR DDLILKNKFT YYISMMLNLV LRLAWAQSVM KIRINKNETR LLDFSLASLE IIRRGHWNFY RLENEHLNNV GKFRAVKTVP LPFRELETD
101: LVRSTDKHER EFLEKADEEL EKVSTFYAAQ EAELLGRGEA LIDQLRILAD VKRILADHAA TRRARGSGRG RSVPAVAPPS PALSNSGRYL LSGLATPQSM
201: SDGSVEQQQA QMTEGAAVAD EVMAALERNG VSFVGLPGKK DAKKEGSGRG GRLQLPSTVR IDIPASNPGR AALKVWEELV NVLRKDGADP AAAFVHRKKV
301: QHAEKNIRDA FMALYRGLEL LKKFSSLNVK AFTKILKKFV KVSEQQRATD LFSQKVKRSS FSTSDKVLQL SDEVEALFLK HFAGNDRMVA MKYLNPQQPK
401: NTHMITFLVG LFTGTFVSLF IIYAILAHVS GIFASTGNTA YMEVVYHVFS MFALISLHCF LYGCNLFMWK STRINQNFIF DFAPNTALTH RDAFLMSASI
501: MCTVVAALVI NLFLRNAGAS YANAVPGGLI VLSAGLLLCP FNVFYRSTRY CFMRIMRNIM FSPFYKVLMA DFFMADQLTS QIPLLRHMEF AACYFMAGSF
601: RANPYETCTT SQQYKHLAYV ISFLPYYWRA MQCLRRYIEE HDINQLANAG KYVSAMVAAA VRFKYNVTPT PFWMWMVLIS SSGATVYQLY WDFVKDWGFF
701: TPKSKNLWLR DDLILKNKFT YYISMMLNLV LRLAWAQSVM KIRINKNETR LLDFSLASLE IIRRGHWNFY RLENEHLNNV GKFRAVKTVP LPFRELETD
001: MVKFSKELEA QLIPEWKEAF VNYCLLKKQI KKIKTSRKPK PASHYPIGHH SDFGRSLFDP VRKLARTFSD KLFSNSEKPE ILQVRRRRGS SETGDDVDEI
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
Arabidopsis Description
PHO1Phosphate transporter PHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S403]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.