Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G388400.1 | |
| TraesCS1B01G415800.1 | |
| TraesCS1D01G396300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23430.1 | TraesCS1A01G388400.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1B01G415800.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1D01G396300.1 | AT2G33770.1 | 22634761 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G364600.1 | Wheat | plastid | 97.74 | 97.5 |
| TraesCS6A01G380000.1 | Wheat | cytosol | 97.12 | 97.0 |
| HORVU6Hr1G089190.23 | Barley | cytosol | 96.62 | 95.3 |
| HORVU6Hr1G089130.9 | Barley | cytosol | 94.61 | 93.33 |
| TraesCS6B01G418000.1 | Wheat | cytosol | 87.22 | 89.12 |
| TraesCS6B01G418100.2 | Wheat | cytosol, peroxisome, plasma membrane | 86.97 | 85.15 |
| Os02t0809800-01 | Rice | cytosol | 82.58 | 80.86 |
| Zm00001d051945_P001 | Maize | peroxisome, plasma membrane, plastid | 55.89 | 80.65 |
| EES07731 | Sorghum | cytosol, nucleus, plasma membrane | 79.32 | 77.96 |
| Zm00001d018445_P004 | Maize | cytosol, nucleus, plasma membrane | 77.57 | 76.89 |
| GSMUA_Achr1P20470_001 | Banana | nucleus | 59.77 | 60.46 |
| CDY09011 | Canola | cytosol, peroxisome, plasma membrane | 44.61 | 59.53 |
| GSMUA_Achr6P36590_001 | Banana | cytosol | 56.27 | 55.23 |
| Bra023727.1-P | Field mustard | cytosol | 54.01 | 54.97 |
| CDX85098 | Canola | cytosol, peroxisome, plasma membrane | 38.6 | 54.61 |
| VIT_05s0049g01410.t01 | Wine grape | cytosol | 54.51 | 54.58 |
| KRH72033 | Soybean | cytosol, extracellular, golgi | 8.52 | 54.4 |
| Bra014948.1-P | Field mustard | cytosol | 53.26 | 54.21 |
| KRH31683 | Soybean | cytosol, nucleus, plasma membrane | 51.38 | 53.66 |
| PGSC0003DMT400044207 | Potato | cytosol, nucleus, plasma membrane | 52.76 | 53.29 |
| Solyc09g090360.2.1 | Tomato | cytosol | 52.51 | 53.17 |
| KRH34432 | Soybean | cytosol | 51.5 | 53.1 |
| KRG92358 | Soybean | cytosol | 51.38 | 52.97 |
| AT3G23430.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.75 | 52.81 |
| KRH69098 | Soybean | cytosol | 50.13 | 52.42 |
| CDX77515 | Canola | cytosol | 53.13 | 52.22 |
| KRH07887 | Soybean | extracellular, golgi, mitochondrion, plasma membrane | 7.14 | 48.72 |
| CDY18123 | Canola | cytosol | 44.24 | 46.26 |
| TraesCS7B01G129700.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.11 | 42.47 |
| CDY09013 | Canola | nucleus | 9.15 | 36.87 |
| TraesCS5B01G070200.1 | Wheat | plasma membrane | 13.03 | 24.53 |
| TraesCS7B01G271100.2 | Wheat | plasma membrane | 13.16 | 24.25 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G418600.1 | EnsemblPlantsGene:TraesCS6B01G418600 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:EXS_C |
| InterPro:IPR004331 | InterPro:IPR004342 | InterPro:SPX_dom | ncoils:Coil | PANTHER:PTHR10783 | PANTHER:PTHR10783:SF80 |
| PFAM:PF03105 | PFAM:PF03124 | PFscan:PS51380 | PFscan:PS51382 | SEG:seg | TMHMM:TMhelix |
| MapMan:24.2.7.4 | MapMan:25.3.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:690732524..690737297
Molecular Weight (calculated)
89955.2 Da
IEP (calculated)
9.817
GRAVY (calculated)
-0.039
Length
798 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKFSREYEA SIIPEWKGAF VDYKCLKKLI KKIKVARRDA ESEGDSSPES AALAAGVESA RYGAGFSVLD PVRALAARFG PRVQASMDDE ESGDSGELVR
101: STDKHEREFL EKADEELEKV NTFYATQEAE LLGRGEALID QLRILADVKR ILADHAATRR ARGSLLGRSR SMPAVAPPSP ALSGSGRYLL SGLATPQSMS
201: DGSVELQQAQ MTEGAAVADE VMAALERNGV SFVGLPGKKD AKKEGSGRGG RLQLPSTVRI DIPASNPGRA ALKVWEELVN VLRKDGADPA AAFVHRKKVQ
301: HAEKNIRDAF MALYRGLELL KKFSSLNVKA FTKILKKFVK VSEQQRATDL FSQKVKRSSF STSDKVLQLS DEVEALFLKH FAGNDRMVAM KYLNPQQPKN
401: THMITFLVGL FTGTFVSLFI IYAILAHVSG IFASTGNTAY MEVVYHVFSM FALISLHCFL YGCNLFMWKS TRINQNFIFD FAPNTALTHR DAFLMSASIM
501: CTVVAALVIN LFLRNAGASY ANAVPGGLIV LSAGLLLCPF NVFYRSTRYC FMRIMRNIVF SPFYKVLMAD FFMADQLTSQ IPLLRHMEFA ACYFMAGSFR
601: ANPYETCTTS QQYKHLAYVI SFLPYYWRAM QCLRRYIEEH DINQLANAGK YVSAMVAAAV RFKYNVTPTP FWMSMVLISS SGATVYQLYW DFVKDWGFFT
701: PKSRNLWLRD DLILKNKFTY YLSMMLNLVL RLAWAQSVMK IRINKNETRL LDFSLASLEI IRRGHWNFYR LENEHLNNVG KFRAVKTVPL PFRELETD
101: STDKHEREFL EKADEELEKV NTFYATQEAE LLGRGEALID QLRILADVKR ILADHAATRR ARGSLLGRSR SMPAVAPPSP ALSGSGRYLL SGLATPQSMS
201: DGSVELQQAQ MTEGAAVADE VMAALERNGV SFVGLPGKKD AKKEGSGRGG RLQLPSTVRI DIPASNPGRA ALKVWEELVN VLRKDGADPA AAFVHRKKVQ
301: HAEKNIRDAF MALYRGLELL KKFSSLNVKA FTKILKKFVK VSEQQRATDL FSQKVKRSSF STSDKVLQLS DEVEALFLKH FAGNDRMVAM KYLNPQQPKN
401: THMITFLVGL FTGTFVSLFI IYAILAHVSG IFASTGNTAY MEVVYHVFSM FALISLHCFL YGCNLFMWKS TRINQNFIFD FAPNTALTHR DAFLMSASIM
501: CTVVAALVIN LFLRNAGASY ANAVPGGLIV LSAGLLLCPF NVFYRSTRYC FMRIMRNIVF SPFYKVLMAD FFMADQLTSQ IPLLRHMEFA ACYFMAGSFR
601: ANPYETCTTS QQYKHLAYVI SFLPYYWRAM QCLRRYIEEH DINQLANAGK YVSAMVAAAV RFKYNVTPTP FWMSMVLISS SGATVYQLYW DFVKDWGFFT
701: PKSRNLWLRD DLILKNKFTY YLSMMLNLVL RLAWAQSVMK IRINKNETRL LDFSLASLEI IRRGHWNFYR LENEHLNNVG KFRAVKTVPL PFRELETD
001: MVKFSKELEA QLIPEWKEAF VNYCLLKKQI KKIKTSRKPK PASHYPIGHH SDFGRSLFDP VRKLARTFSD KLFSNSEKPE ILQVRRRRGS SETGDDVDEI
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
Arabidopsis Description
PHO1Phosphate transporter PHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S403]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.