Factsheet for TraesCS6D01G364600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G388400.1
TraesCS1B01G415800.1
TraesCS1D01G396300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23430.1	TraesCS1A01G388400.1	AT2G33770.1	22634761
AT3G23430.1	TraesCS1B01G415800.1	AT2G33770.1	22634761
AT3G23430.1	TraesCS1D01G396300.1	AT2G33770.1	22634761

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G380000.1	Wheat	cytosol	98.5	98.62
TraesCS6B01G418600.1	Wheat	cytosol, nucleus, plasma membrane	97.5	97.74
HORVU6Hr1G089190.23	Barley	cytosol	96.12	95.06
TraesCS6D01G364100.1	Wheat	cytosol	93.75	94.94
HORVU6Hr1G089130.9	Barley	cytosol	94.12	93.08
TraesCS6D01G364200.1	Wheat	mitochondrion	54.88	89.96
TraesCS6D01G364300.1	Wheat	cytosol	86.5	88.72
Zm00001d051945_P001	Maize	peroxisome, plasma membrane, plastid	56.0	81.01
Os02t0809800-01	Rice	cytosol	82.5	80.98
EES07731	Sorghum	cytosol, nucleus, plasma membrane	79.12	77.96
Zm00001d018445_P004	Maize	cytosol, nucleus, plasma membrane	77.12	76.65
GSMUA_Achr1P20470_001	Banana	nucleus	59.62	60.46
CDY09011	Canola	cytosol, peroxisome, plasma membrane	44.38	59.36
GSMUA_Achr6P36590_001	Banana	cytosol	56.12	55.23
Bra023727.1-P	Field mustard	cytosol	53.5	54.59
VIT_05s0049g01410.t01	Wine grape	cytosol	54.25	54.45
KRH72033	Soybean	cytosol, extracellular, golgi	8.5	54.4
CDX85098	Canola	cytosol, peroxisome, plasma membrane	38.25	54.26
Bra014948.1-P	Field mustard	cytosol	52.88	53.95
KRH31683	Soybean	cytosol, nucleus, plasma membrane	51.5	53.93
KRH34432	Soybean	cytosol	51.38	53.1
PGSC0003DMT400044207	Potato	cytosol, nucleus, plasma membrane	52.38	53.04
KRG92358	Soybean	cytosol	51.25	52.97
Solyc09g090360.2.1	Tomato	cytosol	52.12	52.92
KRH69098	Soybean	cytosol	50.12	52.56
AT3G23430.1	Thale cress	cytosol, nucleus, plasma membrane	51.25	52.43
CDX77515	Canola	cytosol	52.75	51.97
KRH07887	Soybean	extracellular, golgi, mitochondrion, plasma membrane	7.12	48.72
CDY18123	Canola	cytosol	43.75	45.87
TraesCS7D01G231300.1	Wheat	cytosol, peroxisome, plasma membrane	42.62	39.88
CDY09013	Canola	nucleus	8.88	35.86
TraesCS5D01G074100.1	Wheat	plasma membrane	12.88	24.29
TraesCS7D01G365900.3	Wheat	plasma membrane	13.0	24.02

Protein Annotations

EnsemblPlants:TraesCS6D01G364600.1	EnsemblPlantsGene:TraesCS6D01G364600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:EXS_C
InterPro:IPR004331	InterPro:IPR004342	InterPro:SPX_dom	PANTHER:PTHR10783	PANTHER:PTHR10783:SF80	PFAM:PF03105
PFAM:PF03124	PFscan:PS51380	PFscan:PS51382	SEG:seg	TIGR:cd14447	TMHMM:TMhelix
MapMan:24.2.7.4	MapMan:25.3.2.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:454250535..454255104

Molecular Weight (calculated)

90217.4 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.049

Length

800 amino acids

Sequence
(BLAST)

001: MVKFSREYDA SIIPEWKPAF VDYRGLKKLI KRIKVERRDA DDSSAGDSSP ETAALAAGVE SAGYGAGFSV LDPVRALAAR FAPRVQASMD DEESGDSGEL
101: VRSTDKHERE FLEKADEELD KVNTFYATQE AELLGRGEAL IDQLRILADV KRILADHAAT RRARGSLLGR SRSMPAVAPP SPAFSGSGRY LLSGLATPQS
201: MSDGSVELQQ AQMTEGAAVA DEVMAALERN GVSFVGLPGK KDGKKEGSGR GGRLQLPSTV RIDIPASNPG RAALKVWEEL VNVLRKDGAD PAAAFVHRKK
301: VQHAEKNIRD AFMALYRGLE LLKKFSSLNV KAFTKILKKF VKVSEQQRAT DLFSQKVKRS SFSTSDKVLQ LSDEVEALFL KHFAGNDRMV AMKYLNPQQP
401: KNTHMITFLV GLFTGTFVSL FIIYAILAHV SGIFASTGNT AYMEVVYHVF SMFALISLHC FLYGCNLFMW KSTRINQNFI FDFAPNTALT HRDAFLMSAS
501: IMCTVVAALV INLFLRNAGA SYANAVPGGL IVLSAGLLLC PFNVFYRSTR YCFMRIMRNI MFSPFYKVLM ADFFMADQLT SQIPLLRHME FAACYFMAGS
601: FRANPYETCT TSQQYKHLAY VISFLPYYWR AMQCLRRYIE EHDINQLANA GKYVSAMVAA AVRFKYNVTP TPFWMWMVLI SSSGATVYQL YWDFVKDWGF
701: FTPKSKNLWL RDDLILKNKF TYYISMMLNL VLRLAWAQSV MKIRINKNET RLLDFSLASL EIIRRGHWNF YRLENEHLNN VGKFRAVKTV PLPFRELETD

Best Arabidopsis Sequence Match ( AT3G23430.1 )
(BLAST)

001: MVKFSKELEA QLIPEWKEAF VNYCLLKKQI KKIKTSRKPK PASHYPIGHH SDFGRSLFDP VRKLARTFSD KLFSNSEKPE ILQVRRRRGS SETGDDVDEI
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG

Arabidopsis Description

PHO1Phosphate transporter PHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S403]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.