Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G388400.1 | |
| TraesCS1B01G415800.1 | |
| TraesCS1D01G396300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23430.1 | TraesCS1A01G388400.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1B01G415800.1 | AT2G33770.1 | 22634761 |
| AT3G23430.1 | TraesCS1D01G396300.1 | AT2G33770.1 | 22634761 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G364600.1 | Wheat | plastid | 94.94 | 93.75 |
| TraesCS6A01G379700.1 | Wheat | cytosol | 94.56 | 93.49 |
| HORVU6Hr1G089190.23 | Barley | cytosol | 94.43 | 92.21 |
| HORVU6Hr1G089130.9 | Barley | cytosol | 93.8 | 91.59 |
| TraesCS6D01G364200.1 | Wheat | mitochondrion | 55.57 | 89.96 |
| TraesCS6D01G364300.1 | Wheat | cytosol | 86.33 | 87.44 |
| Os02t0809800-01 | Rice | cytosol | 82.41 | 79.88 |
| Zm00001d051945_P001 | Maize | peroxisome, plasma membrane, plastid | 55.32 | 79.02 |
| EES07731 | Sorghum | cytosol, nucleus, plasma membrane | 78.23 | 76.11 |
| Zm00001d018445_P004 | Maize | cytosol, nucleus, plasma membrane | 76.71 | 75.28 |
| GSMUA_Achr1P20470_001 | Banana | nucleus | 59.49 | 59.57 |
| CDY09011 | Canola | cytosol, peroxisome, plasma membrane | 44.3 | 58.53 |
| KRH72033 | Soybean | cytosol, extracellular, golgi | 8.86 | 56.0 |
| CDX85098 | Canola | cytosol, peroxisome, plasma membrane | 38.99 | 54.61 |
| Bra023727.1-P | Field mustard | cytosol | 53.8 | 54.21 |
| GSMUA_Achr6P36590_001 | Banana | cytosol | 55.44 | 53.87 |
| VIT_05s0049g01410.t01 | Wine grape | cytosol | 54.3 | 53.83 |
| Bra014948.1-P | Field mustard | cytosol | 53.29 | 53.7 |
| KRH31683 | Soybean | cytosol, nucleus, plasma membrane | 51.39 | 53.14 |
| AT3G23430.1 | Thale cress | cytosol, nucleus, plasma membrane | 51.9 | 52.43 |
| Solyc09g090360.2.1 | Tomato | cytosol | 52.28 | 52.41 |
| PGSC0003DMT400044207 | Potato | cytosol, nucleus, plasma membrane | 52.41 | 52.41 |
| KRH34432 | Soybean | cytosol | 51.27 | 52.33 |
| KRG92358 | Soybean | cytosol | 51.14 | 52.2 |
| KRH69098 | Soybean | cytosol | 50.25 | 52.03 |
| CDX77515 | Canola | cytosol | 53.16 | 51.72 |
| KRH07887 | Soybean | extracellular, golgi, mitochondrion, plasma membrane | 7.09 | 47.86 |
| CDY18123 | Canola | cytosol | 44.43 | 46.0 |
| TraesCS7D01G231300.1 | Wheat | cytosol, peroxisome, plasma membrane | 42.78 | 39.53 |
| CDY09013 | Canola | nucleus | 9.24 | 36.87 |
| TraesCS5D01G074100.1 | Wheat | plasma membrane | 13.16 | 24.53 |
| TraesCS7D01G365900.3 | Wheat | plasma membrane | 13.29 | 24.25 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G364100.1 | EnsemblPlantsGene:TraesCS6D01G364100 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:EXS_C |
| InterPro:IPR004331 | InterPro:IPR004342 | InterPro:SPX_dom | ncoils:Coil | PANTHER:PTHR10783 | PANTHER:PTHR10783:SF80 |
| PFAM:PF03105 | PFAM:PF03124 | PFscan:PS51380 | PFscan:PS51382 | SEG:seg | TMHMM:TMhelix |
| MapMan:24.2.7.4 | MapMan:25.3.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:454125053..454129748
Molecular Weight (calculated)
89189.0 Da
IEP (calculated)
9.858
GRAVY (calculated)
-0.055
Length
790 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKFSREYDA SIIPEWKPAF VDYKGLKKLI KKIKVARRDA DDSSAGDSSP ETAAGVESVG YGGGFSMLDP VRALAARFAP RVQATSEDEE SGDSGEFVRS
101: TDKHEREFLE KADEELEKVN TFYAAQEAEL LGRGEALIDQ LRILADVKRI LDDHAATRHA RGSLLGRSRS MRAVAPPSPA LSNSGRYLLS GLATPQSMSD
201: GSVELQQAQM TEGAAVADEV MAALERNGVS FVGLPGKKEG SGRGGRLQLP STVRIDIPAS NPGRAALKVW EELVNVLRKD GAAAFVHRKK VQHAEKNIRD
301: AFMALYRGLE LLKKFSSLNV KAFTKILKKF VKVSEQQRAT DLFSQKSKRS SFSTSNKVLQ LSDEVESLFL KNFAGNDRMV AMKYLNPQRP KNTHMITFLV
401: GLFTGTFVSL FIIYAILAHV SGIFASAGNT AYMEIVYHVF SMFALISLHC FLYGCNLFMW KSTRINQNFI FDFAPNTALT HRDAFLMSAS IMCTVVTALV
501: INLFLRNAGA SYANAVPGGL IVLSAGLLFC PFNVFYRSTR YCFMRIMRNI IFSPFYKVLM ADFFMADQLT SQIPLLRHME FAACYFMAGS FRANPYETCT
601: NSQQYKHLAY AISFLPYYWR AMQCLRRYFE EHDINQLANA GKYVSAMVAA AVRFKYSATP TPFWVWLVLI SSSGATIYQL YWDFVKDWGF FTPKSKNLWL
701: RDGLILKNKF TYYISMMLNL VLRLAWTESV MKIRVSKNET RLLDFSLASL EIIRRGHWNF YRLENEHLNN VGKFRAVKTV PLPFRELETD
101: TDKHEREFLE KADEELEKVN TFYAAQEAEL LGRGEALIDQ LRILADVKRI LDDHAATRHA RGSLLGRSRS MRAVAPPSPA LSNSGRYLLS GLATPQSMSD
201: GSVELQQAQM TEGAAVADEV MAALERNGVS FVGLPGKKEG SGRGGRLQLP STVRIDIPAS NPGRAALKVW EELVNVLRKD GAAAFVHRKK VQHAEKNIRD
301: AFMALYRGLE LLKKFSSLNV KAFTKILKKF VKVSEQQRAT DLFSQKSKRS SFSTSNKVLQ LSDEVESLFL KNFAGNDRMV AMKYLNPQRP KNTHMITFLV
401: GLFTGTFVSL FIIYAILAHV SGIFASAGNT AYMEIVYHVF SMFALISLHC FLYGCNLFMW KSTRINQNFI FDFAPNTALT HRDAFLMSAS IMCTVVTALV
501: INLFLRNAGA SYANAVPGGL IVLSAGLLFC PFNVFYRSTR YCFMRIMRNI IFSPFYKVLM ADFFMADQLT SQIPLLRHME FAACYFMAGS FRANPYETCT
601: NSQQYKHLAY AISFLPYYWR AMQCLRRYFE EHDINQLANA GKYVSAMVAA AVRFKYSATP TPFWVWLVLI SSSGATIYQL YWDFVKDWGF FTPKSKNLWL
701: RDGLILKNKF TYYISMMLNL VLRLAWTESV MKIRVSKNET RLLDFSLASL EIIRRGHWNF YRLENEHLNN VGKFRAVKTV PLPFRELETD
001: MVKFSKELEA QLIPEWKEAF VNYCLLKKQI KKIKTSRKPK PASHYPIGHH SDFGRSLFDP VRKLARTFSD KLFSNSEKPE ILQVRRRRGS SETGDDVDEI
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
101: YQTELVQLFS EEDEVKVFFA RLDEELNKVN QFHKPKETEF LERGEILKKQ LETLAELKQI LSDRKKRNLS GSNSHRSFSS SVRNSDFSAG SPGELSEIQS
201: ETSRTDEIIE ALERNGVSFI NSATRSKTKG GKPKMSLRVD IPDAVAGAEG GIARSIATAM SVLWEELVNN PRSDFTNWKN IQSAEKKIRS AFVELYRGLG
301: LLKTYSSLNM IAFTKIMKKF DKVAGQNASS TYLKVVKRSQ FISSDKVVRL MDEVESIFTK HFANNDRKKA MKFLKPHQTK DSHMVTFFVG LFTGCFISLF
401: VIYIILAHLS GIFTSSDQVS YLETVYPVFS VFALLSLHMF MYGCNLYMWK NTRINYTFIF EFAPNTALRY RDAFLMGTTF MTSVVAAMVI HLILRASGFS
501: ASQVDTIPGI LLLIFICVLI CPFNTFYRPT RFCFIRILRK IVCSPFYKVL MVDFFMGDQL TSQIPLLRHL ETTGCYFLAQ SFKTHEYNTC KNGRYYREFA
601: YLISFLPYFW RAMQCVRRWW DESNPDHLIN MGKYVSAMVA AGVRITYARE NNDLWLTMVL VSSVVATIYQ LYWDFVKDWG LLNPKSKNPW LRDNLVLRNK
701: NFYYLSIALN LVLRVAWIET IMRFRVSPVQ SHLLDFFLAS LEVIRRGHWN FYRVENEHLN NVGQFRAVKT VPLPFLDRDS DG
Arabidopsis Description
PHO1Phosphate transporter PHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S403]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.