Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G148900.1 | Wheat | plastid | 98.87 | 98.65 |
| TraesCS6A01G164100.1 | Wheat | plastid | 95.02 | 95.89 |
| HORVU6Hr1G032490.1 | Barley | plastid | 95.02 | 94.17 |
| Os02t0200300-02 | Rice | golgi, mitochondrion, vacuole | 66.06 | 68.87 |
| KXG29738 | Sorghum | golgi, mitochondrion, vacuole | 63.35 | 66.67 |
| Zm00001d015783_P001 | Maize | golgi, plasma membrane, vacuole | 62.67 | 66.27 |
| TraesCS7B01G279900.1 | Wheat | golgi, vacuole | 50.91 | 56.39 |
| TraesCS3B01G278400.1 | Wheat | extracellular, vacuole | 35.52 | 40.15 |
| TraesCS3B01G406200.2 | Wheat | extracellular, plasma membrane, vacuole | 36.65 | 39.71 |
| TraesCS1B01G285400.2 | Wheat | mitochondrion, plasma membrane, plastid, vacuole | 36.88 | 39.66 |
| TraesCS2B01G311200.1 | Wheat | extracellular, plasma membrane, vacuole | 35.07 | 39.64 |
| TraesCS4B01G225100.1 | Wheat | vacuole | 35.52 | 37.56 |
| TraesCS7B01G233500.1 | Wheat | extracellular | 34.16 | 37.28 |
| TraesCS1B01G072500.1 | Wheat | extracellular, vacuole | 33.71 | 36.7 |
| TraesCS1B01G072600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 32.35 | 35.48 |
| TraesCS4B01G053700.2 | Wheat | vacuole | 32.35 | 34.21 |
| TraesCS4B01G020100.1 | Wheat | extracellular | 33.71 | 32.18 |
| TraesCS6B01G355600.1 | Wheat | vacuole | 33.03 | 30.54 |
| TraesCS1B01G454200.1 | Wheat | extracellular, vacuole | 27.6 | 30.42 |
| TraesCS4B01G233900.2 | Wheat | plasma membrane, plastid, vacuole | 31.0 | 29.72 |
| TraesCS2B01G459400.1 | Wheat | extracellular | 30.32 | 29.13 |
| TraesCS4B01G142000.1 | Wheat | golgi | 29.41 | 28.14 |
| TraesCS5B01G329800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, vacuole | 29.19 | 26.33 |
| TraesCS3B01G311300.2 | Wheat | vacuole | 31.22 | 25.99 |
| TraesCS7B01G153600.1 | Wheat | vacuole | 28.73 | 25.76 |
| TraesCS4B01G242300.1 | Wheat | extracellular | 28.51 | 25.2 |
| TraesCS7B01G285700.2 | Wheat | extracellular | 31.67 | 25.04 |
| TraesCS2B01G274900.1 | Wheat | plasma membrane | 29.19 | 24.25 |
| TraesCS2B01G241200.3 | Wheat | endoplasmic reticulum, extracellular, vacuole | 29.86 | 23.57 |
| TraesCS2B01G220300.1 | Wheat | plasma membrane | 26.02 | 23.33 |
| TraesCS1B01G454500.1 | Wheat | vacuole | 29.41 | 23.17 |
| TraesCS5B01G153900.1 | Wheat | plasma membrane | 26.02 | 23.14 |
| TraesCS2B01G241300.1 | Wheat | extracellular, vacuole | 28.51 | 22.87 |
| TraesCS5B01G279000.2 | Wheat | extracellular | 28.51 | 22.62 |
| TraesCS1B01G453900.1 | Wheat | vacuole | 28.96 | 22.42 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G188000.1 | EnsemblPlantsGene:TraesCS6B01G188000 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glyco_hydro_17 | InterPro:Glycoside_hydrolase_SF |
| KEGG:00500+3.2.1.39 | PANTHER:PTHR32227 | PANTHER:PTHR32227:SF223 | PFAM:PF00332 | SEG:seg | SUPFAM:SSF51445 |
| TMHMM:TMhelix | MapMan:50.3.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:216468621..216470042
Molecular Weight (calculated)
48548.6 Da
IEP (calculated)
9.876
GRAVY (calculated)
-0.062
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCTSSKVAP RPSSNAPPTT GHSLLLLQSP PKLPATRSPP RRKIMAVIPR GRPDSSLGHR RPVLLLLFFC LLAFFPCRVA AFHSFVGTYG VNYGRIADNL
101: PPPTEVVKLL QMARIKNVRI FDSDHTVLDA FRNSGLNLAI AIPNGLVKDI SATPSKAMDW VNENVRPYYP ATRIVAIIVG NEILGGQDTG LAEALFGAVV
201: NIHDALRAMR LSGRIEVNTP HSEAVFGTSY PPSAGTFRPD LMPYLKPLLD FFSKTGAPFY VNAYPFLAYM SDPEHIDVNY ALMKPNAGIL DQKTNLHYDN
301: MFEAQIDATY AALEAAGYSD MEVRVSETGW ASAGDATEPG ATLENARTYN FNLRKRLFLR KGTPYRPKRV VKAFIFALFN EDLKTGPGSE RHFGLFKPDG
401: SVSLDLGFKG LTSSSSSIKG WKIARYSATL LSSTLIFLAL WT
101: PPPTEVVKLL QMARIKNVRI FDSDHTVLDA FRNSGLNLAI AIPNGLVKDI SATPSKAMDW VNENVRPYYP ATRIVAIIVG NEILGGQDTG LAEALFGAVV
201: NIHDALRAMR LSGRIEVNTP HSEAVFGTSY PPSAGTFRPD LMPYLKPLLD FFSKTGAPFY VNAYPFLAYM SDPEHIDVNY ALMKPNAGIL DQKTNLHYDN
301: MFEAQIDATY AALEAAGYSD MEVRVSETGW ASAGDATEPG ATLENARTYN FNLRKRLFLR KGTPYRPKRV VKAFIFALFN EDLKTGPGSE RHFGLFKPDG
401: SVSLDLGFKG LTSSSSSIKG WKIARYSATL LSSTLIFLAL WT
001: MRSSKLLLLK FFFFFFFNLT SLEYQVDGAF VGTYGINYGR IADNIPSPEK VVLLLKQAKI RNVRIYDVDH TVLEAFSGTG LDLVVGLPNG FLKEMSSNAD
101: HAFSWVKENI QSFLPKTRIR GIAIGNEVLG GGDSELAGAL LGAAKNVYNA LKKMNLEDTV QITTAHSQAV FSDSYPPSSC VFKENVVQFM KPLLEFFQQI
201: GSPFCLNAYP FLAYTYNPKE IDINYALFKP TEGIYDPKTD LHYDNMLDAQ IDAAYMALQD AGFKKMEVMI TETGWASKGD SDEPAATPEN ARTYNYNLRK
301: RLAKKKGTPL RPKTVLKAYI FALFNENSKP GKSSETHFGL FKPDGTISYD IGFNNLKSDS PKSLISSSKS ARYYVALVIS VSAFLLMI
101: HAFSWVKENI QSFLPKTRIR GIAIGNEVLG GGDSELAGAL LGAAKNVYNA LKKMNLEDTV QITTAHSQAV FSDSYPPSSC VFKENVVQFM KPLLEFFQQI
201: GSPFCLNAYP FLAYTYNPKE IDINYALFKP TEGIYDPKTD LHYDNMLDAQ IDAAYMALQD AGFKKMEVMI TETGWASKGD SDEPAATPEN ARTYNYNLRK
301: RLAKKKGTPL RPKTVLKAYI FALFNENSKP GKSSETHFGL FKPDGTISYD IGFNNLKSDS PKSLISSSKS ARYYVALVIS VSAFLLMI
Arabidopsis Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:O48727]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.