Factsheet for TraesCS4B01G142000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G175900.1	Wheat	extracellular	98.7	98.92
TraesCS4D01G136800.1	Wheat	cytosol, extracellular, plastid, vacuole	95.45	98.22
HORVU4Hr1G027740.1	Barley	vacuole	96.54	89.38
Os11t0704600-01	Rice	extracellular	82.25	80.51
EES10308	Sorghum	endoplasmic reticulum, extracellular, vacuole	74.24	73.45
Zm00001d004768_P001	Maize	extracellular	72.08	73.35
VIT_13s0019g01180.t01	Wine grape	extracellular, vacuole	50.43	52.13
KRH01668	Soybean	extracellular	50.43	51.1
AT3G55430.1	Thale cress	extracellular	49.57	51.0
CDY62387	Canola	extracellular	49.57	51.0
CDY02936	Canola	extracellular	49.78	50.88
CDY53692	Canola	extracellular	49.13	50.56
CDX76097	Canola	extracellular	49.35	50.55
Bra003212.1-P	Field mustard	extracellular	48.92	50.33
Bra014747.1-P	Field mustard	extracellular	49.13	50.33
Bra007161.1-P	Field mustard	extracellular	49.35	50.33
CDY40218	Canola	extracellular	49.35	50.33
CDY41234	Canola	extracellular	49.57	50.33
CDY40219	Canola	extracellular	48.48	49.78
Bra007162.1-P	Field mustard	extracellular	48.05	49.33
CDY41232	Canola	extracellular	48.05	49.22
Solyc07g005330.2.1	Tomato	extracellular	45.89	46.19
PGSC0003DMT400008245	Potato	vacuole	45.67	45.67
CDY20461	Canola	extracellular	42.86	44.0
Bra005028.1-P	Field mustard	extracellular	42.64	43.97
TraesCS2B01G459400.1	Wheat	extracellular	43.72	43.91
CDY53600	Canola	extracellular	42.64	43.78
PGSC0003DMT400060499	Potato	extracellular	45.02	41.27
TraesCS4B01G020100.1	Wheat	extracellular	41.34	41.25
Solyc05g054440.2.1	Tomato	unclear	46.1	40.49
TraesCS5B01G329800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	41.77	39.39
TraesCS3B01G278400.1	Wheat	extracellular, vacuole	32.25	38.11
TraesCS2B01G311200.1	Wheat	extracellular, plasma membrane, vacuole	31.82	37.6
TraesCS1B01G072500.1	Wheat	extracellular, vacuole	32.68	37.19
TraesCS4B01G053700.2	Wheat	vacuole	33.12	36.6
TraesCS6B01G355600.1	Wheat	vacuole	37.66	36.4
AT2G39640.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	41.77	35.15
TraesCS1B01G072600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	30.52	34.99
TraesCS3B01G406200.2	Wheat	extracellular, plasma membrane, vacuole	30.52	34.56
TraesCS7B01G153600.1	Wheat	vacuole	36.8	34.48
TraesCS4B01G225100.1	Wheat	vacuole	30.95	34.21
TraesCS1B01G285400.2	Wheat	mitochondrion, plasma membrane, plastid, vacuole	30.3	34.06
TraesCS7B01G233500.1	Wheat	extracellular	29.44	33.58
TraesCS7B01G279900.1	Wheat	golgi, vacuole	28.57	33.08
TraesCS1B01G454200.1	Wheat	extracellular, vacuole	27.71	31.92
TraesCS4B01G233900.2	Wheat	plasma membrane, plastid, vacuole	31.82	31.89
TraesCS7B01G285700.2	Wheat	extracellular	38.1	31.48
TraesCS3B01G311300.2	Wheat	vacuole	36.15	31.45
TraesCS5B01G279000.2	Wheat	extracellular	35.93	29.8
TraesCS6B01G188000.1	Wheat	plastid	28.14	29.41
TraesCS4B01G242300.1	Wheat	extracellular	31.82	29.4
TraesCS1B01G453900.1	Wheat	vacuole	36.15	29.25
TraesCS1B01G454500.1	Wheat	vacuole	35.28	29.06
TraesCS2B01G241300.1	Wheat	extracellular, vacuole	34.63	29.04
TraesCS5B01G153900.1	Wheat	plasma membrane	30.95	28.77
TraesCS2B01G220300.1	Wheat	plasma membrane	30.3	28.4
TraesCS2B01G241200.3	Wheat	endoplasmic reticulum, extracellular, vacuole	33.98	28.04
TraesCS2B01G274900.1	Wheat	plasma membrane	30.74	26.69

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:1.20.58.1040	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_17
InterPro:Glycoside_hydrolase_SF	PFAM:PF00332	PFAM:PF07983	ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF62
SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G142000	EnsemblPlants:TraesCS4B01G142000.1	InterPro:X8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:187432501..187435766

Molecular Weight (calculated)

48961.2 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.070

Length

462 amino acids

Sequence
(BLAST)

001: MPLLLPLLML LAAGAAGAES ATPSLHIGVN YGANADNLPS PTSVATFLAT KTTIDRVKLF DANPAFISAF AGTPISLAVS LPNSALPALA DKATGLDAAR
101: SWIRANLSPY VPATNVTLLL AGNEILLSTD TNLILSLLPA MRRLAQALKA EGLTGVRVTT PHYLGILAPS DGIPSNASFR AGYNTKLFPA MLQFHRDTGS
201: PFMVNPYPYF SYRPETLNYA LFRPNSGIYD PATKLNYTSM LDAQMDAIYT AMKKLGYGDV DIAVGEAGWP TQAEPGQIGV GVQEARDFNE GMIRVCSSGK
301: GTPLMPNRTF ETYLFSLFDE NQKPGPIAER HFGLFNPDFT PVYDLGLLRD GASVAPTPSP NPSPNPSPKP SPSGGGKWCV AKDGANGTDL QNNINYACGF
401: VDCKPIQSGG ACFSPNSLQS HASYVMNAYY QANGHTDLAC DFKGTGVVTS SDPSYGGCKY VS

Best Arabidopsis Sequence Match ( AT5G24318.1 )
(BLAST)

001: MNYVLPFFSL SMFTIVGVLL ILSTGSEASI GVNYGTLANN LPPPQQVAEF LLHSTVINRI RLFDTDPQIL QAFANTGIAV TVTVPNDQIP HLTNLSSAKQ
101: WISDHIQPHF PSTNIIRILV GNEVISTADH LLIRTLIPAM QSLHTALVSA SLHRRIQIST PHSLGTLTNS TPPSSAKFRR GYDAQVLKPL LSFLRSTSSP
201: FVVNPYPFFG YSIETLDFAL FRPNPGLFDQ HTKLLYTNML DAQLDSVYSA MDKLGFSDVE IVIGEIGWPS EGDIDQIGVD VDTAAEFNKN LIARVDSGTG
301: TPLMPNRTFE TYIFALFNEN LKSGPTSERN FGIFRSDLTP IYDIGILRPT FRSSDPVYNP RSPVRGSSSK RWCVTKAGAE TVALQRNIDY VCGLGLDCRP
401: INEGGLCYLP NTVKAHSKYA MNLYYQTMEK HEFDCDFDNT GEITTIDPSY GNCEYQAN

Arabidopsis Description

O-Glycosyl hydrolases family 17 protein [Source:UniProtKB/TrEMBL;Acc:F4KH28]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.