Factsheet for VIT_06s0009g02550.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21710_001	Banana	mitochondrion	86.6	86.6
GSMUA_Achr4P10770_001	Banana	mitochondrion	83.51	83.51
VIT_01s0011g04990.t01	Wine grape	mitochondrion	82.47	82.47
VIT_08s0040g01150.t01	Wine grape	cytosol, mitochondrion	82.47	82.47
KRH66747	Soybean	cytosol, mitochondrion	81.44	81.44
GSMUA_AchrUn_...	Banana	mitochondrion	81.44	81.44
KRG95075	Soybean	mitochondrion	80.41	80.41
CDY39593	Canola	mitochondrion	76.29	75.51
CDY52023	Canola	mitochondrion	75.26	74.49
CDY36520	Canola	mitochondrion	75.26	74.49
CDY33726	Canola	mitochondrion	75.26	74.49
CDX83998	Canola	mitochondrion	75.26	74.49
CDX81688	Canola	mitochondrion	75.26	74.49
Bra026789.1-P	Field mustard	mitochondrion	75.26	74.49
AT1G14980.1	Thale cress	mitochondrion	75.26	74.49
Bra016677.1-P	Field mustard	mitochondrion	75.26	74.49
Zm00001d029263_P001	Maize	mitochondrion	73.2	73.2
Os07t0641700-01	Rice	mitochondrion	73.2	72.45
Zm00001d007031_P002	Maize	mitochondrion	72.16	70.71
EER97627	Sorghum	mitochondrion	71.13	70.41
EER92223	Sorghum	mitochondrion	70.1	70.1
Zm00001d022307_P003	Maize	mitochondrion	71.13	69.7
Os03t0366000-01	Rice	mitochondrion	68.04	67.35
TraesCS2D01G150600.1	Wheat	mitochondrion	67.01	65.0
TraesCS2B01G171400.1	Wheat	mitochondrion	67.01	65.0
TraesCS2A01G146000.1	Wheat	mitochondrion	67.01	65.0
KRH65868	Soybean	mitochondrion	56.7	59.78
Zm00001d019958_P001	Maize	mitochondrion	40.21	52.7
OQU81064	Sorghum	mitochondrion	37.11	47.37
Bra026173.1-P	Field mustard	mitochondrion	64.95	45.99
HORVU2Hr1G025930.4	Barley	cytosol	58.76	45.97
OQU88508	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	35.05	45.95
KXG24557	Sorghum	cytosol, endoplasmic reticulum, mitochondrion	35.05	45.95
KRH55636	Soybean	cytosol, mitochondrion, nucleus	42.27	45.05
OQU91489	Sorghum	cytosol	34.02	40.74

Protein Annotations

EntrezGene:100254674	wikigene:100254674	MapMan:19.1.7.3	Gene3D:2.30.33.40	EMBL:AM447250	ProteinID:CAN69712
ProteinID:CAN69712.1	ProteinID:CBI24287	ProteinID:CBI24287.3	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	UniProt:D7T1A7
EMBL:FN595504	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006950
GO:GO:0006986	GO:GO:0008150	GO:GO:0009987	GO:GO:0046872	GO:GO:0051082	GO:GO:0051085
GO:GO:0051087	InterPro:GroES-like_sf	InterPro:IPR037124	EntrezGene:LOC100254674	wikigene:LOC100254674	PFAM:PF00166
PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF25	SMART:SM00883	SUPFAM:SSF50129	TIGR:TC61067
UniParc:UPI00015C9D19	ArrayExpress:VIT_06s0009g02550	EnsemblPlantsGene:VIT_06s0009g02550	EnsemblPlants:VIT_06s0009g02550.t01	unigene:Vvi.2083	RefSeq:XP_002264840
RefSeq:XP_002264840.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:15277929..15282089

Molecular Weight (calculated)

10567.9 Da

IEP (calculated)

9.016

GRAVY (calculated)

-0.281

Length

97 amino acids

Sequence
(BLAST)

1: MAKRLIPTLN RILVEKIVPP SKTNAGILLP EKTAQLNSGK VVAVGPGARD RDGKLIPLSV REGDTVLLPE YGGNQVKLGD KEYHLFRDDD ILGTLHD

Best Arabidopsis Sequence Match ( AT1G14980.1 )
(BLAST)

1: MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE NEYHLFRDED VLGTLHED

Arabidopsis Description

CPN1010 kDa chaperonin, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34893]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.