Factsheet for VIT_17s0053g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

nucleus 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0068g01280.t01
VIT_17s0053g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41990.1	VIT_14s0068g01280.t01	AT1G12840.1	16427632
AT5G41990.1	VIT_14s0068g01280.t01	AT1G12840.1	21798944
AT5G41990.1	VIT_17s0053g01080.t01	AT5G41990.1	16427632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g01690.t01	Wine grape	cytosol	37.5	23.23
VIT_10s0116g00480.t01	Wine grape	cytosol	47.83	21.1
VIT_12s0057g00520.t01	Wine grape	cytosol, plastid	37.5	20.47
VIT_02s0025g02360.t01	Wine grape	nucleus	58.15	16.51
AT1G64630.1	Thale cress	cytosol	46.74	16.41
CDX67520	Canola	nucleus	45.11	15.46
KRH17593	Soybean	cytosol	51.63	15.37
AT5G41990.1	Thale cress	cytosol	46.74	15.28
KRG90091	Soybean	cytosol	51.09	15.21
CDY13374	Canola	nucleus	45.65	15.16
VIT_15s0046g00100.t01	Wine grape	cytosol	51.63	15.01
Bra028518.1-P	Field mustard	nucleus	45.11	14.96
PGSC0003DMT400031918	Potato	cytosol	47.83	14.94
Solyc08g082980.2.1	Tomato	cytosol	46.74	14.68
VIT_17s0000g09380.t01	Wine grape	nucleus	46.74	12.86
VIT_06s0004g07920.t01	Wine grape	cytosol	42.93	12.52
VIT_04s0044g00850.t01	Wine grape	cytosol	46.2	12.21
VIT_14s0030g01660.t01	Wine grape	cytosol	46.74	11.89
VIT_05s0020g03380.t01	Wine grape	cytosol	46.2	11.63
VIT_08s0058g01130.t01	Wine grape	cytosol	38.04	11.18
VIT_05s0136g00340.t01	Wine grape	cytosol	3.26	1.94

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	ProteinID:CBI35320	ProteinID:CBI35320.3	UniProt:D7TXU5	EMBL:FN596258
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFscan:PS50011	PANTHER:PTHR13902	PANTHER:PTHR13902:SF107	InterPro:Prot_kinase_dom
SUPFAM:SSF56112	UniParc:UPI0001BE44DD	ArrayExpress:VIT_17s0053g01080	EnsemblPlantsGene:VIT_17s0053g01080	EnsemblPlants:VIT_17s0053g01080.t01	SEG:seg

Description

No Description!

Coordinates

chr17:+:17077436..17089089

Molecular Weight (calculated)

21238.7 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.165

Length

184 amino acids

Sequence
(BLAST)

001: MEKLKLEIWV WQLSCSNLLH EASTIGTPEF MAPELYEEEY NELVDIYSFG MCILELITCE YPYNEYKNPA QIYKKVSSGI KPAPLGKVSD PQVKYFIEKR
101: LVPASLRLPV QVLLKDAFFA TKNSKEPVYN HMQLFNSTHN SFNLPESQSH GMDPDPKVDG LLVSTHNEKH QYLILVLFLV IFHL

Best Arabidopsis Sequence Match ( AT1G49160.4 )
(BLAST)

001: MKAVKCWARQ ILTGLKYLHS QDPPIIHRDI KCDNIFINGN HGEVKIGDLG LATVMEQANA KSVIGTPEFM APELYDENYN ELADIYSFGM CMLEMVTFEY
101: PYCECRNSAQ IYKKVSSGIK PASLSKVKDP EVMKFIEKCL LPASERLSAE ELLLDSFLNV NGLVMNNPLP LPDIVMPKEG SFGERCLMSE GPPNARNRTM
201: SMNLDEDNNL PIVISSNNSG TNCIEVRRAK RGNFFVLKGE ENDENSVSLI LRIVDENGRV RNIHFLFFQE GDTASNVSSE MVEQLELTDK NVKFIAELID
301: VLLVNLIPNW KTDVAVDHLI HPQQNQSSKD NHQNGASSQA GESISHSLSS DYCPRSDDEA NPTVAATTED QEAEKPGSLE EEEEDERLKE ELEKIEERFR
401: EEMKEITRKR EEATMETKNR FFEKKMQQVE

Arabidopsis Description

WNK7Protein kinase superfamily protein [Source:TAIR;Acc:AT1G49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.