Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67520
CDX71966
CDX98037
CDY13374
CDY16036
CDY19421
CDY21070
CDY26596
CDY66539

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G41990.1 CDX71966 AT1G12840.1 16427632
AT5G41990.1 CDX98037 AT1G12840.1 16427632
AT5G41990.1 CDY16036 AT1G12840.1 16427632
AT5G41990.1 CDY19421 AT1G12840.1 16427632
AT5G41990.1 CDY21070 AT1G12840.1 16427632
AT5G41990.1 CDY26596 AT1G12840.1 16427632
AT5G41990.1 CDY66539 AT1G12840.1 16427632
AT5G41990.1 CDX71966 AT1G12840.1 21798944
AT5G41990.1 CDX98037 AT1G12840.1 21798944
AT5G41990.1 CDY16036 AT1G12840.1 21798944
AT5G41990.1 CDY19421 AT1G12840.1 21798944
AT5G41990.1 CDY21070 AT1G12840.1 21798944
AT5G41990.1 CDY26596 AT1G12840.1 21798944
AT5G41990.1 CDY66539 AT1G12840.1 21798944
AT5G41990.1 CDX67520 AT5G41990.1 16427632
AT5G41990.1 CDY13374 AT5G41990.1 16427632
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028518.1-P Field mustard nucleus 99.44 96.22
CDY13374 Canola nucleus 97.58 94.58
AT5G41990.1 Thale cress cytosol 85.47 81.53
CDY17333 Canola cytosol, nucleus, plastid 29.61 51.62
CDY20759 Canola cytosol 29.61 51.29
CDY36754 Canola cytosol 29.05 51.15
CDY45665 Canola cytosol, nucleus, plastid 29.42 51.13
CDY11988 Canola cytosol 29.05 50.98
CDY06573 Canola cytosol 29.24 50.81
CDY72128 Canola cytosol 38.92 50.0
CDX82329 Canola cytosol 46.55 48.64
PGSC0003DMT400031918 Potato cytosol 52.14 47.54
Solyc08g082980.2.1 Tomato cytosol 51.4 47.1
CDY18540 Canola cytosol 49.53 46.67
CDY65280 Canola cytosol 49.53 46.67
CDY72029 Canola cytosol 37.62 46.54
CDX75984 Canola cytosol 48.23 46.33
KRH17593 Soybean cytosol 52.7 45.79
KRG90091 Soybean cytosol 52.14 45.31
VIT_17s0053g01080.t01 Wine grape cytosol, vacuole 15.46 45.11
CDX80684 Canola cytosol 39.29 44.42
CDX86190 Canola cytosol 39.29 44.42
CDY59818 Canola cytosol 39.66 44.28
CDY21817 Canola cytosol, nucleus, plastid 41.71 43.41
CDX77897 Canola cytosol, nucleus, plastid 41.71 43.33
CDY00011 Canola cytosol 39.66 41.6
CDY69580 Canola cytosol 38.92 39.51
CDX88670 Canola cytosol 38.92 39.43
CDX92942 Canola nucleus 38.36 38.43
CDY43861 Canola cytosol 39.48 38.34
CDY24308 Canola nucleus 37.99 37.99
CDY32991 Canola cytosol 39.66 37.97
CDX78018 Canola nucleus 38.92 37.86
CDX73710 Canola nucleus 38.92 37.79
CDY10641 Canola nucleus 38.36 37.12
CDY38324 Canola nucleus 38.17 36.61
CDY32707 Canola cytosol 37.62 36.07
CDY29791 Canola cytosol 19.93 36.03
CDY40685 Canola cytosol 40.78 33.08
CDX74162 Canola cytosol 40.78 33.08
CDY41908 Canola cytosol 39.48 31.98
CDY50765 Canola cytosol 40.04 31.71
CDY02813 Canola nucleus 37.62 24.88
CDY21369 Canola nucleus 10.06 9.8
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.2.4Gene3D:3.10.20.90Gene3D:3.30.200.20GO:A0A078BSG2EnsemblPlants:CDX67520
ProteinID:CDX67520ProteinID:CDX67520.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00098642001
InterPro:IPR000719InterPro:Kinase-like_dom_sfPFAM:PF00069ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR13902
PANTHER:PTHR13902:SF107InterPro:Prot_kinase_domSMART:SM00220SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0004EEEDD5
SEG:seg:::::
Description
BnaA07g15600D
Coordinates
chrLK031787:-:747422..750125
Molecular Weight (calculated)
60796.1 Da
IEP (calculated)
5.224
GRAVY (calculated)
-0.516
Length
537 amino acids
Sequence
(BLAST)
001: MAFGSSSGME EEADFADKDP TGRYIRYHDV LGRGAFKTVY KAFDEVDGIE VAWNLVSIED VMQMPGQLER LYSEVHLLKA LKHENIIKLF NSWVDEKNKT
101: INMITELFTS GSLRLYRKKH RKVDPKAIKN WARQILKGLT YLHSQKPPVI HRDLKCDNIF VNGNTGEIKI GDLGLATVLQ QPTARSVIGT PEFMAPELYE
201: EEYTELVDIY SFGMCMLEMV TCEYPYNECR NQAQIYKKVT SGIKPQSLSR VDDPQVRQFI EKCLLPAESR PKALELSMDP FLARDGSKDS APLLASSSTA
301: SKPPQPEHLP MDVDHHHNEN KSVSVSSSRK SNNEESYPWC QTIELQRFAE DKEFRLRGER SDDATASMLL RIGDSSGKGR IVHFAFYLNS DTATAIAEEM
401: VEELHLTSQE VIVIADMIDD LIMQLHSERS SSSHPNQTSP HLAAQSMKSG ISTDYYLPFS SNGSAGQEAE SMSSFLDSCS MMSTLYISDN EYPDDLKTEL
501: NMIESQYNQS VQDLLKLKED AVENAKRKWI MKKQKGL
Best Arabidopsis Sequence Match ( AT5G41990.1 )
(BLAST)
001: MASGSGFLGQ ISSMEEADFA EKDPSGRYIR YDDVLGRGAF KTVYKAFDEV DGIEVAWNLV SIEDVMQMPG QLERLYSEVH LLKALKHENI IKLFYSWVDE
101: KNKTINMITE LFTSGSLRVY RKKHRKVDPK AIKNWARQIL KGLNYLHSQN PPVIHRDLKC DNIFVNGNTG EVKIGDLGLA TVLQQPTARS VIGTPEFMAP
201: ELYEEEYNEL VDIYSFGMCM LEMVTCEYPY NECRNQAQIY KKVTSNIKPQ SLGKVDDPQV RQFIEKCLLP ASSRPTALEL SKDPFLARDG GKDSALLASS
301: STSSKYVRPP QLEHLPMDVD HNENKSVSSN EDYPWSQTIE LQRIAENKEF RLRGERSDDV TASMVLRIAD PSGKCRIVHF AFYLESDTAT AIAEEMVEEL
401: HLTSQEVVVI ADMIDDFIMQ LLSDRTSSHH NQNSPRLTHE DHEAANQQTV NSKDEEAAGQ SMKSDISADY YFPYSANDGN AAMEAGRDAE SMSSYLDSCS
501: MMSTIYNLSI SDNDYPEDLK TELNLIESQF NQSFQDLLKL KEDAIENAKR KWITKKQKAV NIS
Arabidopsis Description
WNK8Serine/threonine-protein kinase WNK8 [Source:UniProtKB/Swiss-Prot;Acc:Q944Q0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.