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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74552 Canola cytosol 70.99 78.81
CDY01696 Canola cytosol 72.14 78.75
Bra028156.1-P Field mustard cytosol 71.37 77.59
VIT_14s0006g01780.t01 Wine grape extracellular 17.56 23.35
GSMUA_Achr1P23080_001 Banana cytosol 20.61 16.82
GSMUA_Achr10P... Banana cytosol 22.14 16.67
AT1G56210.1 Thale cress nucleus 22.14 15.93
GSMUA_Achr8P31620_001 Banana cytosol 22.9 15.83
Solyc02g091310.1.1 Tomato cytosol 21.37 15.73
GSMUA_Achr3P01290_001 Banana cytosol 21.76 15.36
PGSC0003DMT400078636 Potato cytosol 20.61 15.17
GSMUA_Achr2P22760_001 Banana cytosol 20.23 15.1
TraesCS3D01G031400.1 Wheat cytosol 23.66 15.01
Os01t0125600-01 Rice cytosol 24.05 15.0
TraesCS3A01G048000.1 Wheat cytosol 23.66 14.9
GSMUA_Achr7P12020_001 Banana cytosol 19.85 14.86
TraesCS3B01G034100.1 Wheat cytosol 23.28 14.52
AT5G27690.1 Thale cress nucleus 19.08 14.2
GSMUA_Achr9P19310_001 Banana cytosol 20.99 14.14
EES02570 Sorghum cytosol 23.28 13.65
Zm00001d040040_P001 Maize cytosol 23.66 13.42
AT3G06130.1 Thale cress cytosol 24.05 13.32
Zm00001d008515_P001 Maize cytosol 22.14 12.53
AT1G23000.2 Thale cress cytosol 18.32 11.48
HORVU3Hr1G004420.1 Barley nucleus 18.32 11.21
AT3G05220.1 Thale cress cytosol 24.43 11.09
AT5G19090.1 Thale cress cytosol 24.43 10.9
Protein Annotations
Gene3D:3.30.70.100MapMan:35.1EntrezGene:833764ProteinID:AED94242.1ArrayExpress:AT5G37860EnsemblPlantsGene:AT5G37860
RefSeq:AT5G37860TAIR:AT5G37860RefSeq:AT5G37860-TAIR-GEnsemblPlants:AT5G37860.1TAIR:AT5G37860.1Unigene:At.55197
EMBL:DQ056698GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006810GO:GO:0008150GO:GO:0009987GO:GO:0019725GO:GO:0030001
GO:GO:0046872GO:GO:0046914GO:GO:0046916InterPro:HMA_domInterPro:HMA_dom_sfInterPro:IPR006121
RefSeq:NP_198602.1PFAM:PF00403PO:PO:0007611PO:PO:0009046PFscan:PS50846PANTHER:PTHR22814
PANTHER:PTHR22814:SF134UniProt:Q4PSD8SUPFAM:SSF55008UniParc:UPI0000162780SEG:seg:
Description
Copper-binding family protein [Source:UniProtKB/TrEMBL;Acc:Q4PSD8]
Coordinates
chr5:-:15069578..15070555
Molecular Weight (calculated)
30560.5 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.826
Length
262 amino acids
Sequence
(BLAST)
001: MPRNVYEPLK TYFLKVNINC QGCKMKVKKT LRKIEGVYSV DIDTDQEAVI VRGNLDPEIL VKKLNKRGKH AQLMFLTPYH KDQYFGNHQA VLNHDNRSLG
101: NTQYNFGSNH NNVPSYERLN HQSDEEMMMM MNMKPVMMND ADYFEMSDSP EDFQELFGEI PQRHNNYEDV KPNLMRDMDL GYSNAYPAAE TMNMQIGGRV
201: NNMMVNERGF HGQMMNERGF HGQMMNGPSL VPQSMNHEQF SSRPVQSMNQ QFSSRPVHGF YY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.