Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX74552 | Canola | cytosol | 70.99 | 78.81 |
CDY01696 | Canola | cytosol | 72.14 | 78.75 |
Bra028156.1-P | Field mustard | cytosol | 71.37 | 77.59 |
VIT_14s0006g01780.t01 | Wine grape | extracellular | 17.56 | 23.35 |
GSMUA_Achr1P23080_001 | Banana | cytosol | 20.61 | 16.82 |
GSMUA_Achr10P... | Banana | cytosol | 22.14 | 16.67 |
AT1G56210.1 | Thale cress | nucleus | 22.14 | 15.93 |
GSMUA_Achr8P31620_001 | Banana | cytosol | 22.9 | 15.83 |
Solyc02g091310.1.1 | Tomato | cytosol | 21.37 | 15.73 |
GSMUA_Achr3P01290_001 | Banana | cytosol | 21.76 | 15.36 |
PGSC0003DMT400078636 | Potato | cytosol | 20.61 | 15.17 |
GSMUA_Achr2P22760_001 | Banana | cytosol | 20.23 | 15.1 |
TraesCS3D01G031400.1 | Wheat | cytosol | 23.66 | 15.01 |
Os01t0125600-01 | Rice | cytosol | 24.05 | 15.0 |
TraesCS3A01G048000.1 | Wheat | cytosol | 23.66 | 14.9 |
GSMUA_Achr7P12020_001 | Banana | cytosol | 19.85 | 14.86 |
TraesCS3B01G034100.1 | Wheat | cytosol | 23.28 | 14.52 |
AT5G27690.1 | Thale cress | nucleus | 19.08 | 14.2 |
GSMUA_Achr9P19310_001 | Banana | cytosol | 20.99 | 14.14 |
EES02570 | Sorghum | cytosol | 23.28 | 13.65 |
Zm00001d040040_P001 | Maize | cytosol | 23.66 | 13.42 |
AT3G06130.1 | Thale cress | cytosol | 24.05 | 13.32 |
Zm00001d008515_P001 | Maize | cytosol | 22.14 | 12.53 |
AT1G23000.2 | Thale cress | cytosol | 18.32 | 11.48 |
HORVU3Hr1G004420.1 | Barley | nucleus | 18.32 | 11.21 |
AT3G05220.1 | Thale cress | cytosol | 24.43 | 11.09 |
AT5G19090.1 | Thale cress | cytosol | 24.43 | 10.9 |
Protein Annotations
Gene3D:3.30.70.100 | MapMan:35.1 | EntrezGene:833764 | ProteinID:AED94242.1 | ArrayExpress:AT5G37860 | EnsemblPlantsGene:AT5G37860 |
RefSeq:AT5G37860 | TAIR:AT5G37860 | RefSeq:AT5G37860-TAIR-G | EnsemblPlants:AT5G37860.1 | TAIR:AT5G37860.1 | Unigene:At.55197 |
EMBL:DQ056698 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0030001 |
GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
RefSeq:NP_198602.1 | PFAM:PF00403 | PO:PO:0007611 | PO:PO:0009046 | PFscan:PS50846 | PANTHER:PTHR22814 |
PANTHER:PTHR22814:SF134 | UniProt:Q4PSD8 | SUPFAM:SSF55008 | UniParc:UPI0000162780 | SEG:seg | : |
Description
Copper-binding family protein [Source:UniProtKB/TrEMBL;Acc:Q4PSD8]
Coordinates
chr5:-:15069578..15070555
Molecular Weight (calculated)
30560.5 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.826
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRNVYEPLK TYFLKVNINC QGCKMKVKKT LRKIEGVYSV DIDTDQEAVI VRGNLDPEIL VKKLNKRGKH AQLMFLTPYH KDQYFGNHQA VLNHDNRSLG
101: NTQYNFGSNH NNVPSYERLN HQSDEEMMMM MNMKPVMMND ADYFEMSDSP EDFQELFGEI PQRHNNYEDV KPNLMRDMDL GYSNAYPAAE TMNMQIGGRV
201: NNMMVNERGF HGQMMNERGF HGQMMNGPSL VPQSMNHEQF SSRPVQSMNQ QFSSRPVHGF YY
101: NTQYNFGSNH NNVPSYERLN HQSDEEMMMM MNMKPVMMND ADYFEMSDSP EDFQELFGEI PQRHNNYEDV KPNLMRDMDL GYSNAYPAAE TMNMQIGGRV
201: NNMMVNERGF HGQMMNERGF HGQMMNGPSL VPQSMNHEQF SSRPVQSMNQ QFSSRPVHGF YY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.