Factsheet for Bra028156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74552	Canola	cytosol	94.61	96.61
CDY01696	Canola	cytosol	95.02	95.42
AT5G37860.1	Thale cress	nucleus	77.59	71.37
VIT_14s0006g01780.t01	Wine grape	extracellular	21.58	26.4
Solyc02g091310.1.1	Tomato	cytosol	24.07	16.29
PGSC0003DMT400078636	Potato	cytosol	23.24	15.73
Bra027947.1-P	Field mustard	nucleus	22.41	15.3
GSMUA_Achr1P23080_001	Banana	cytosol	19.92	14.95
GSMUA_Achr7P12020_001	Banana	cytosol	21.58	14.86
GSMUA_Achr2P22760_001	Banana	cytosol	21.58	14.81
GSMUA_Achr3P01290_001	Banana	cytosol	22.41	14.56
GSMUA_Achr10P...	Banana	cytosol	20.33	14.08
GSMUA_Achr8P31620_001	Banana	cytosol	21.99	13.98
Bra024557.1-P	Field mustard	cytosol	20.33	13.73
Bra020580.1-P	Field mustard	nucleus	19.92	13.37
TraesCS3D01G031400.1	Wheat	cytosol	22.82	13.32
TraesCS3A01G048000.1	Wheat	cytosol	22.82	13.22
Os01t0125600-01	Rice	cytosol	22.82	13.1
EES02570	Sorghum	cytosol	24.07	12.98
TraesCS3B01G034100.1	Wheat	cytosol	22.41	12.86
Bra020774.1-P	Field mustard	cytosol	25.31	12.63
GSMUA_Achr9P19310_001	Banana	cytosol	19.92	12.34
Zm00001d040040_P001	Maize	cytosol	23.24	12.12
Zm00001d008515_P001	Maize	cytosol	22.82	11.88
Bra001140.1-P	Field mustard	cytosol, mitochondrion	25.31	11.69
Bra001184.1-P	Field mustard	cytosol	22.82	11.65
Bra040643.1-P	Field mustard	cytosol	24.48	10.61
Bra023702.1-P	Field mustard	cytosol	25.73	10.32
HORVU3Hr1G004420.1	Barley	nucleus	17.84	10.05
Bra039452.1-P	Field mustard	cytosol	23.24	9.24
Bra002209.1-P	Field mustard	cytosol, peroxisome, plastid, vacuole	23.65	8.6

Protein Annotations

EnsemblPlants:Bra028156.1	EnsemblPlants:Bra028156.1-P	EnsemblPlantsGene:Bra028156	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF134	PFAM:PF00403	PFscan:PS50846	SEG:seg
SUPFAM:SSF55008	UniParc:UPI00025443DA	UniProt:M4EH91	MapMan:35.2	:	:

Description

AT5G37860 (E=2e-086) | copper-binding family protein

Coordinates

chrA04:-:6228295..6229204

Molecular Weight (calculated)

28246.6 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.820

Length

241 amino acids

Sequence
(BLAST)

001: MEKSRMPRNV YEPLKVFMQQ TYFLKVNINC HGCNRKVKKT LRKVEGVYSV DIDTDQQAVI VRGNLDPEIL VTKLNRRGKY AELLFMSPFH GNHHDNRSLR
101: NAPYNFGNNH FNNVPSYERQ SDGEMMKMMM ANNMKPVMMN EADYFQMSDS SEDFQELFGE TAQRHNYDEE VHPNLMRDMD LGYSNAYPAA ETMNMHIPGR
201: SNNTMMNERS FHGQMMNGPS LVPQFMNQEQ FSARQLNGFY Y

Best Arabidopsis Sequence Match ( AT5G37860.1 )
(BLAST)

001: MPRNVYEPLK TYFLKVNINC QGCKMKVKKT LRKIEGVYSV DIDTDQEAVI VRGNLDPEIL VKKLNKRGKH AQLMFLTPYH KDQYFGNHQA VLNHDNRSLG
101: NTQYNFGSNH NNVPSYERLN HQSDEEMMMM MNMKPVMMND ADYFEMSDSP EDFQELFGEI PQRHNNYEDV KPNLMRDMDL GYSNAYPAAE TMNMQIGGRV
201: NNMMVNERGF HGQMMNERGF HGQMMNGPSL VPQSMNHEQF SSRPVQSMNQ QFSSRPVHGF YY

Arabidopsis Description

Copper-binding family protein [Source:UniProtKB/TrEMBL;Acc:Q4PSD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.